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Blood-based Transcriptomic and Proteomic Biomarkers of Emphysema.
Suryadevara R, Gregory A, Lu R, Xu Z, Masoomi A, Lutz SM, Berman S, Yun JH, Saferali A, Ryu MH, Moll M, Sin DD, Hersh CP, Silverman EK, Dy J, Pratte KA, Bowler RP, Castaldi PJ, Boueiz A; COPDGene investigators. Suryadevara R, et al. Among authors: xu z. Am J Respir Crit Care Med. 2024 Feb 1;209(3):273-287. doi: 10.1164/rccm.202301-0067OC. Am J Respir Crit Care Med. 2024. PMID: 37917913
Blood Gene Expression and Immune Cell Subtypes Associated with Chronic Obstructive Pulmonary Disease Exacerbations.
Ryu MH, Yun JH, Morrow JD, Saferali A, Castaldi P, Chase R, Stav M, Xu Z, Barjaktarevic I, Han M, Labaki W, Huang YJ, Christenson S, O'Neal W, Bowler R, Sin DD, Freeman CM, Curtis JL, Hersh CP. Ryu MH, et al. Among authors: xu z. Am J Respir Crit Care Med. 2023 Aug 1;208(3):247-255. doi: 10.1164/rccm.202301-0085OC. Am J Respir Crit Care Med. 2023. PMID: 37286295 Free PMC article.
Joint clinical and molecular subtyping of COPD with variational autoencoders.
Maiorino E, De Marzio M, Xu Z, Yun JH, Chase RP, Hersh CP, Weiss ST, Silverman EK, Castaldi PJ, Glass K. Maiorino E, et al. Among authors: xu z. medRxiv [Preprint]. 2024 Jan 10:2023.08.19.23294298. doi: 10.1101/2023.08.19.23294298. medRxiv. 2024. PMID: 38260473 Free PMC article. Preprint.
HHIP protein interactions in lung cells provide insight into COPD pathogenesis.
Deritei D, Inuzuka H, Castaldi PJ, Yun JH, Xu Z, Anamika WJ, Asara JM, Guo F, Zhou X, Glass K, Wei W, Silverman EK. Deritei D, et al. Among authors: xu z. bioRxiv [Preprint]. 2024 Apr 1:2024.04.01.586839. doi: 10.1101/2024.04.01.586839. bioRxiv. 2024. PMID: 38617310 Free PMC article. Preprint.
Lung Transcriptomics Links Emphysema to Barrier Dysfunction and Macrophage Subpopulations.
Lu R, Gregory A, Suryadevara R, Xu Z, Jain D, Morrow JD, Hobbs BD, Yun JH, Lichtblau N, Chase R, Curtis JL, Sauler M, Bartholmai BJ, Silverman EK, Hersh CP, Castaldi PJ, Boueiz A; COPDGene investigators. Lu R, et al. Among authors: xu z. Am J Respir Crit Care Med. 2024 Jun 27. doi: 10.1164/rccm.202305-0793OC. Online ahead of print. Am J Respir Crit Care Med. 2024. PMID: 38935868
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.
Gentili M, Glass K, Maiorino E, Hobbs BD, Xu Z, Castaldi PJ, Cho MH, Hersh CP, Qiao D, Morrow JD, Carey VJ, Platig J, Silverman EK. Gentili M, et al. Among authors: xu z. PLoS Comput Biol. 2024 Oct 17;20(10):e1011079. doi: 10.1371/journal.pcbi.1011079. eCollection 2024 Oct. PLoS Comput Biol. 2024. PMID: 39418301 Free PMC article.
B cell immune repertoire sequencing in tobacco cigarette smoking, vaping, and chronic obstructive pulmonary disease in the COPDGene cohort.
Moll M, Xu Z, Boueiz A, Ryu MH, Silverman EK, Cho MH, Hersh CP, Sauler M, Polverino F, Kinney GL, Curtis JL, Crotty-Alexander LE, Vollmers C, Castaldi PJ. Moll M, et al. Among authors: xu z. medRxiv [Preprint]. 2024 Oct 8:2024.10.07.24315038. doi: 10.1101/2024.10.07.24315038. medRxiv. 2024. PMID: 39417147 Free PMC article. Preprint.
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