Yang Y - Search Results

1

EVLncRNAs 3.0: an updated comprehensive database for manually curated functional long non-coding RNAs validated by low-throughput experiments.

Zhou B, Ji B, Shen C, Zhang X, Yu X, Huang P, Yu R, Zhang H, Dou X, Chen Q, Zeng Q, Wang X, Cao Z, Hu G, Xu S, Zhao H, Yang Y, Zhou Y, Wang J. Zhou B, et al. Among authors: yang y. Nucleic Acids Res. 2024 Jan 5;52(D1):D98-D106. doi: 10.1093/nar/gkad1057. Nucleic Acids Res. 2024. PMID: 37953349 Free PMC article.

2

Specific interactions for ab initio folding of protein terminal regions with secondary structures.

Yang Y, Zhou Y. Yang Y, et al. Proteins. 2008 Aug;72(2):793-803. doi: 10.1002/prot.21968. Proteins. 2008. PMID: 18260109

3

Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions.

Yang Y, Zhou Y. Yang Y, et al. Protein Sci. 2008 Jul;17(7):1212-9. doi: 10.1110/ps.033480.107. Epub 2008 May 9. Protein Sci. 2008. PMID: 18469178 Free PMC article.

4

Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: yang y. Bioinformatics. 2010 Aug 1;26(15):1857-63. doi: 10.1093/bioinformatics/btq295. Epub 2010 Jun 4. Bioinformatics. 2010. PMID: 20525822 Free PMC article.

5

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: yang y. Nucleic Acids Res. 2011 Apr;39(8):3017-25. doi: 10.1093/nar/gkq1266. Epub 2010 Dec 22. Nucleic Acids Res. 2011. PMID: 21183467 Free PMC article.

6

Highly accurate and high-resolution function prediction of RNA binding proteins by fold recognition and binding affinity prediction.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: yang y. RNA Biol. 2011 Nov-Dec;8(6):988-96. doi: 10.4161/rna.8.6.17813. Epub 2011 Nov 1. RNA Biol. 2011. PMID: 21955494 Free PMC article.

7

A new size-independent score for pairwise protein structure alignment and its application to structure classification and nucleic-acid binding prediction.

Yang Y, Zhan J, Zhao H, Zhou Y. Yang Y, et al. Proteins. 2012 Aug;80(8):2080-8. doi: 10.1002/prot.24100. Epub 2012 May 25. Proteins. 2012. PMID: 22522696 Free PMC article.

8

Prediction of RNA binding proteins comes of age from low resolution to high resolution.

Zhao H, Yang Y, Zhou Y. Zhao H, et al. Among authors: yang y. Mol Biosyst. 2013 Oct;9(10):2417-25. doi: 10.1039/c3mb70167k. Mol Biosyst. 2013. PMID: 23872922 Free PMC article. Review.

9

Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome.

Zhao H, Yang Y, Janga SC, Kao CC, Zhou Y. Zhao H, et al. Among authors: yang y. Proteins. 2014 Apr;82(4):640-7. doi: 10.1002/prot.24441. Epub 2013 Nov 22. Proteins. 2014. PMID: 24123256 Free PMC article.

10

The role of semidisorder in temperature adaptation of bacterial FlgM proteins.

Wang J, Yang Y, Cao Z, Li Z, Zhao H, Zhou Y. Wang J, et al. Among authors: yang y. Biophys J. 2013 Dec 3;105(11):2598-605. doi: 10.1016/j.bpj.2013.10.026. Biophys J. 2013. PMID: 24314090 Free PMC article.

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