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standR: spatial transcriptomic analysis for GeoMx DSP data.
Liu N, Bhuva DD, Mohamed A, Bokelund M, Kulasinghe A, Tan CW, Davis MJ. Liu N, et al. Among authors: davis mj. Nucleic Acids Res. 2024 Jan 11;52(1):e2. doi: 10.1093/nar/gkad1026. Nucleic Acids Res. 2024. PMID: 37953397 Free PMC article.
Single sample scoring of molecular phenotypes.
Foroutan M, Bhuva DD, Lyu R, Horan K, Cursons J, Davis MJ. Foroutan M, et al. Among authors: davis mj. BMC Bioinformatics. 2018 Nov 6;19(1):404. doi: 10.1186/s12859-018-2435-4. BMC Bioinformatics. 2018. PMID: 30400809 Free PMC article.
Extensive transcriptional responses are co-ordinated by microRNAs as revealed by Exon-Intron Split Analysis (EISA).
Pillman KA, Scheer KG, Hackett-Jones E, Saunders K, Bert AG, Toubia J, Whitfield HJ, Sapkota S, Sourdin L, Pham H, Le TD, Cursons J, Davis MJ, Gregory PA, Goodall GJ, Bracken CP. Pillman KA, et al. Among authors: davis mj. Nucleic Acids Res. 2019 Sep 19;47(16):8606-8619. doi: 10.1093/nar/gkz664. Nucleic Acids Res. 2019. PMID: 31372646 Free PMC article.
Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma.
Genovesi LA, Millar A, Tolson E, Singleton M, Hassall E, Kojic M, Brighi C, Girard E, Andradas C, Kuchibhotla M, Bhuva DD, Endersby R, Gottardo NG, Bernard A, Adolphe C, Olson JM, Taylor MD, Davis MJ, Wainwright BJ. Genovesi LA, et al. Among authors: davis mj. Genome Med. 2021 Jun 21;13(1):103. doi: 10.1186/s13073-021-00920-z. Genome Med. 2021. PMID: 34154646 Free PMC article.
Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures.
Kulasinghe A, Tan CW, Ribeiro Dos Santos Miggiolaro AF, Monkman J, SadeghiRad H, Bhuva DD, Motta Junior JDS, Busatta Vaz de Paula C, Nagashima S, Baena CP, Souza-Fonseca-Guimaraes P, de Noronha L, McCulloch T, Rossi GR, Cooper C, Tang B, Short KR, Davis MJ, Souza-Fonseca-Guimaraes F, Belz GT, O'Byrne K. Kulasinghe A, et al. Among authors: davis mj. Eur Respir J. 2022 Jun 2;59(6):2101881. doi: 10.1183/13993003.01881-2021. Print 2022 Jun. Eur Respir J. 2022. PMID: 34675048 Free PMC article.
775 results