Muhlich JL - Search Results

1

Quality Control for Single Cell Analysis of High-plex Tissue Profiles using CyLinter.

Baker GJ, Novikov E, Zhao Z, Vallius T, Davis JA, Lin JR, Muhlich JL, Mittendorf EA, Santagata S, Guerriero JL, Sorger PK. Baker GJ, et al. Among authors: muhlich jl. bioRxiv [Preprint]. 2024 Mar 22:2023.11.01.565120. doi: 10.1101/2023.11.01.565120. bioRxiv. 2024. Update in: Nat Methods. 2024 Dec;21(12):2248-2259. doi: 10.1038/s41592-024-02328-0 PMID: 37961235 Free PMC article. Updated. Preprint.

2

Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities.

Tolopko AN, Sullivan JP, Erickson SD, Wrobel D, Chiang SL, Rudnicki K, Rudnicki S, Nale J, Selfors LM, Greenhouse D, Muhlich JL, Shamu CE. Tolopko AN, et al. Among authors: muhlich jl. BMC Bioinformatics. 2010 May 18;11:260. doi: 10.1186/1471-2105-11-260. BMC Bioinformatics. 2010. PMID: 20482787 Free PMC article.

3

piNET: a versatile web platform for downstream analysis and visualization of proteomics data.

Shamsaei B, Chojnacki S, Pilarczyk M, Najafabadi M, Niu W, Chen C, Ross K, Matlock A, Muhlich J, Chutipongtanate S, Zheng J, Turner J, Vidović D, Jaffe J, MacCoss M, Wu C, Pillai A, Ma'ayan A, Schürer S, Kouril M, Medvedovic M, Meller J. Shamsaei B, et al. Nucleic Acids Res. 2020 Jul 2;48(W1):W85-W93. doi: 10.1093/nar/gkaa436. Nucleic Acids Res. 2020. PMID: 32469073 Free PMC article.

4

Flexible informatics for linking experimental data to mathematical models via DataRail.

Saez-Rodriguez J, Goldsipe A, Muhlich J, Alexopoulos LG, Millard B, Lauffenburger DA, Sorger PK. Saez-Rodriguez J, et al. Bioinformatics. 2008 Mar 15;24(6):840-7. doi: 10.1093/bioinformatics/btn018. Epub 2008 Jan 24. Bioinformatics. 2008. PMID: 18218655 Free PMC article.

5

Fuzzy logic analysis of kinase pathway crosstalk in TNF/EGF/insulin-induced signaling.

Aldridge BB, Saez-Rodriguez J, Muhlich JL, Sorger PK, Lauffenburger DA. Aldridge BB, et al. Among authors: muhlich jl. PLoS Comput Biol. 2009 Apr;5(4):e1000340. doi: 10.1371/journal.pcbi.1000340. Epub 2009 Apr 3. PLoS Comput Biol. 2009. PMID: 19343194 Free PMC article.

6

Adaptive informatics for multifactorial and high-content biological data.

Millard BL, Niepel M, Menden MP, Muhlich JL, Sorger PK. Millard BL, et al. Among authors: muhlich jl. Nat Methods. 2011 Jun;8(6):487-93. doi: 10.1038/nmeth.1600. Epub 2011 Apr 24. Nat Methods. 2011. PMID: 21516115 Free PMC article.

7

Properties of cell death models calibrated and compared using Bayesian approaches.

Eydgahi H, Chen WW, Muhlich JL, Vitkup D, Tsitsiklis JN, Sorger PK. Eydgahi H, et al. Among authors: muhlich jl. Mol Syst Biol. 2013;9:644. doi: 10.1038/msb.2012.69. Mol Syst Biol. 2013. PMID: 23385484 Free PMC article.

8

Programming biological models in Python using PySB.

Lopez CF, Muhlich JL, Bachman JA, Sorger PK. Lopez CF, et al. Among authors: muhlich jl. Mol Syst Biol. 2013;9:646. doi: 10.1038/msb.2013.1. Mol Syst Biol. 2013. PMID: 23423320 Free PMC article.

9

Analysis of growth factor signaling in genetically diverse breast cancer lines.

Niepel M, Hafner M, Pace EA, Chung M, Chai DH, Zhou L, Muhlich JL, Schoeberl B, Sorger PK. Niepel M, et al. Among authors: muhlich jl. BMC Biol. 2014 Mar 21;12:20. doi: 10.1186/1741-7007-12-20. BMC Biol. 2014. PMID: 24655548 Free PMC article.

10

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.

Duan Q, Flynn C, Niepel M, Hafner M, Muhlich JL, Fernandez NF, Rouillard AD, Tan CM, Chen EY, Golub TR, Sorger PK, Subramanian A, Ma'ayan A. Duan Q, et al. Among authors: muhlich jl. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W449-60. doi: 10.1093/nar/gku476. Epub 2014 Jun 6. Nucleic Acids Res. 2014. PMID: 24906883 Free PMC article.

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