Chen S - Search Results

1

Phylogenetic analysis of endogenous viral elements in the rice genome reveals local chromosomal evolution in Oryza AA-genome species.

Saito N, Chen S, Kitajima K, Zhou Z, Koide Y, Encabo JR, Diaz MGQ, Choi IR, Koyanagi KO, Kishima Y. Saito N, et al. Among authors: chen s. Front Plant Sci. 2023 Oct 27;14:1261705. doi: 10.3389/fpls.2023.1261705. eCollection 2023. Front Plant Sci. 2023. PMID: 37965031 Free PMC article.

2

Evolutionary force of AT-rich repeats to trap genomic and episomal DNAs into the rice genome: lessons from endogenous pararetrovirus.

Liu R, Koyanagi KO, Chen S, Kishima Y. Liu R, et al. Among authors: chen s. Plant J. 2012 Dec;72(5):817-28. doi: 10.1111/tpj.12002. Epub 2012 Oct 12. Plant J. 2012. PMID: 22900922 Free article.

3

Rice genomes recorded ancient pararetrovirus activities: Virus genealogy and multiple origins of endogenization during rice speciation.

Chen S, Liu R, Koyanagi KO, Kishima Y. Chen S, et al. Virology. 2014 Dec;471-473:141-52. doi: 10.1016/j.virol.2014.09.014. Epub 2014 Nov 5. Virology. 2014. PMID: 25461539 Free article.

4

Endogenous pararetroviruses in rice genomes as a fossil record useful for the emerging field of palaeovirology.

Chen S, Kishima Y. Chen S, et al. Mol Plant Pathol. 2016 Dec;17(9):1317-1320. doi: 10.1111/mpp.12490. Mol Plant Pathol. 2016. PMID: 27870389 Free PMC article. No abstract available.

5

Genomic fossils reveal adaptation of non-autonomous pararetroviruses driven by concerted evolution of noncoding regulatory sequences.

Chen S, Zheng H, Kishima Y. Chen S, et al. PLoS Pathog. 2017 Jun 29;13(6):e1006413. doi: 10.1371/journal.ppat.1006413. eCollection 2017 Jun. PLoS Pathog. 2017. PMID: 28662199 Free PMC article.

6

Ancient Endogenous Pararetroviruses in Oryza Genomes Provide Insights into the Heterogeneity of Viral Gene Macroevolution.

Chen S, Saito N, Encabo JR, Yamada K, Choi IR, Kishima Y. Chen S, et al. Genome Biol Evol. 2018 Oct 1;10(10):2686-2696. doi: 10.1093/gbe/evy207. Genome Biol Evol. 2018. PMID: 30239708 Free PMC article.

7

Association Study Reveals Genetic Loci Responsible for Arsenic, Cadmium and Lead Accumulation in Rice Grain in Contaminated Farmlands.

Liu X, Chen S, Chen M, Zheng G, Peng Y, Shi X, Qin P, Xu X, Teng S. Liu X, et al. Among authors: chen m, chen s. Front Plant Sci. 2019 Feb 5;10:61. doi: 10.3389/fpls.2019.00061. eCollection 2019. Front Plant Sci. 2019. PMID: 30804959 Free PMC article.

8

Comprehensive QTL analyses of nitrogen use efficiency in indica rice.

Liu X, Jiang H, Yang J, Han J, Jin M, Zhang H, Chen L, Chen S, Teng S. Liu X, et al. Among authors: chen l, chen s. Front Plant Sci. 2022 Sep 23;13:992225. doi: 10.3389/fpls.2022.992225. eCollection 2022. Front Plant Sci. 2022. PMID: 36212385 Free PMC article.

9

Cryptic cytoplasmic male sterility-causing gene in the mitochondrial genome of common japonica rice.

Toriyama K, Iwai Y, Takeda S, Takatsuka A, Igarashi K, Furuta T, Chen S, Kanaoka Y, Kishima Y, Arimura SI, Kazama T. Toriyama K, et al. Among authors: chen s. Plant J. 2024 Nov;120(3):941-949. doi: 10.1111/tpj.17028. Epub 2024 Sep 9. Plant J. 2024. PMID: 39250703

10

Genome-wide binding analysis reveals that ANAC060 directly represses sugar-induced transcription of ABI5 in Arabidopsis.

Yu B, Wang Y, Zhou H, Li P, Liu C, Chen S, Peng Y, Zhang Y, Teng S. Yu B, et al. Among authors: chen s. Plant J. 2020 Aug;103(3):965-979. doi: 10.1111/tpj.14777. Epub 2020 May 18. Plant J. 2020. PMID: 32314488 Free article.

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