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RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12.
Salgado H, Gama-Castro S, Lara P, Mejia-Almonte C, Alarcón-Carranza G, López-Almazo AG, Betancourt-Figueroa F, Peña-Loredo P, Alquicira-Hernández S, Ledezma-Tejeida D, Arizmendi-Zagal L, Mendez-Hernandez F, Diaz-Gomez AK, Ochoa-Praxedis E, Muñiz-Rascado LJ, García-Sotelo JS, Flores-Gallegos FA, Gómez L, Bonavides-Martínez C, Del Moral-Chávez VM, Hernández-Alvarez AJ, Santos-Zavaleta A, Capella-Gutierrez S, Gelpi JL, Collado-Vides J. Salgado H, et al. Among authors: hernandez alvarez aj. Nucleic Acids Res. 2024 Jan 5;52(D1):D255-D264. doi: 10.1093/nar/gkad1072. Nucleic Acids Res. 2024. PMID: 37971353 Free PMC article.
RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J. Salgado H, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D203-13. doi: 10.1093/nar/gks1201. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203884 Free PMC article.
Host population structure and species resolution reveal prophage transmission dynamics.
Tenorio-Carnalla K, Aguilar-Vera A, Hernández-Alvarez AJ, López-Leal G, Mateo-Estrada V, Santamaria RI, Castillo-Ramírez S. Tenorio-Carnalla K, et al. Among authors: hernandez alvarez aj. mBio. 2024 Oct 16;15(10):e0237724. doi: 10.1128/mbio.02377-24. Epub 2024 Sep 24. mBio. 2024. PMID: 39315801 Free PMC article.
Rhizobium etli CFN42 and Sinorhizobium meliloti 1021 bioinformatic transcriptional regulatory networks from culture and symbiosis.
Taboada-Castro H, Hernández-Álvarez AJ, Escorcia-Rodríguez JM, Freyre-González JA, Galán-Vásquez E, Encarnación-Guevara S. Taboada-Castro H, et al. Among authors: hernandez alvarez aj. Front Bioinform. 2024 Aug 28;4:1419274. doi: 10.3389/fbinf.2024.1419274. eCollection 2024. Front Bioinform. 2024. PMID: 39263245 Free PMC article.
RhizoBindingSites v2.0 Is a Bioinformatic Database of DNA Motifs Potentially Involved in Transcriptional Regulation Deduced From Their Genomic Sites.
Taboada-Castro H, Hernández-Álvarez AJ, Castro-Mondragón JA, Encarnación-Guevara S. Taboada-Castro H, et al. Among authors: hernandez alvarez aj. Bioinform Biol Insights. 2024 Sep 6;18:11779322241272395. doi: 10.1177/11779322241272395. eCollection 2024. Bioinform Biol Insights. 2024. PMID: 39246685 Free PMC article.
27 results