Liang F - Search Results

1

Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance.

Ren L, Duan X, Dong L, Zhang R, Yang J, Gao Y, Peng R, Hou W, Liu Y, Li J, Yu Y, Zhang N, Shang J, Liang F, Wang D, Chen H, Sun L, Hao L; Quartet Project Team; Scherer A, Nordlund J, Xiao W, Xu J, Tong W, Hu X, Jia P, Ye K, Li J, Jin L, Hong H, Wang J, Fan S, Fang X, Zheng Y, Shi L. Ren L, et al. Among authors: liang f. Genome Biol. 2023 Nov 27;24(1):270. doi: 10.1186/s13059-023-03109-2. Genome Biol. 2023. PMID: 38012772 Free PMC article.

2

Short- and long-read metagenomics expand individualized structural variations in gut microbiomes.

Chen L, Zhao N, Cao J, Liu X, Xu J, Ma Y, Yu Y, Zhang X, Zhang W, Guan X, Yu X, Liu Z, Fan Y, Wang Y, Liang F, Wang D, Zhao L, Song M, Wang J. Chen L, et al. Among authors: liang f. Nat Commun. 2022 Jun 8;13(1):3175. doi: 10.1038/s41467-022-30857-9. Nat Commun. 2022. PMID: 35676264 Free PMC article.

3

Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet.

Jia P, Dong L, Yang X, Wang B, Bush SJ, Wang T, Lin J, Wang S, Zhao X, Xu T, Che Y, Dang N, Ren L, Zhang Y, Wang X, Liang F, Wang Y, Ruan J, Xia H, Zheng Y, Shi L, Lv Y, Wang J, Ye K. Jia P, et al. Among authors: liang f. Genome Biol. 2023 Dec 4;24(1):277. doi: 10.1186/s13059-023-03116-3. Genome Biol. 2023. PMID: 38049885 Free PMC article.

4

NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads.

Hu J, Wang Z, Sun Z, Hu B, Ayoola AO, Liang F, Li J, Sandoval JR, Cooper DN, Ye K, Ruan J, Xiao CL, Wang D, Wu DD, Wang S. Hu J, et al. Among authors: liang f. Genome Biol. 2024 Apr 26;25(1):107. doi: 10.1186/s13059-024-03252-4. Genome Biol. 2024. PMID: 38671502 Free PMC article.

5

NextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads.

Hu J, Wang Z, Liang F, Liu SL, Ye K, Wang DP. Hu J, et al. Among authors: liang f. Genomics Proteomics Bioinformatics. 2024 May 9;22(1):qzad009. doi: 10.1093/gpbjnl/qzad009. Genomics Proteomics Bioinformatics. 2024. PMID: 38862426 Free article.

6

Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing.

Liu Z, Zhu H, Liu Y, Kuang J, Zhou K, Liang F, Liu Z, Wang D, Ke W. Liu Z, et al. Among authors: liang f. BMC Genomics. 2016 Jun 17;17:466. doi: 10.1186/s12864-016-2781-4. BMC Genomics. 2016. PMID: 27317430 Free PMC article.

7

Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genome.

Ning G, Cheng X, Luo P, Liang F, Wang Z, Yu G, Li X, Wang D, Bao M. Ning G, et al. Among authors: liang f. Sci Rep. 2017 Mar 8;7:43793. doi: 10.1038/srep43793. Sci Rep. 2017. PMID: 28272530 Free PMC article.

8

Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome.

Fu X, Li J, Tian Y, Quan W, Zhang S, Liu Q, Liang F, Zhu X, Zhang L, Wang D, Hu J. Fu X, et al. Among authors: liang f. Gigascience. 2017 Dec 1;6(12):1-7. doi: 10.1093/gigascience/gix112. Gigascience. 2017. PMID: 29186486 Free PMC article.

9

DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning.

Ni P, Huang N, Zhang Z, Wang DP, Liang F, Miao Y, Xiao CL, Luo F, Wang J. Ni P, et al. Among authors: liang f. Bioinformatics. 2019 Nov 1;35(22):4586-4595. doi: 10.1093/bioinformatics/btz276. Bioinformatics. 2019. PMID: 30994904

10

Long-read sequencing and haplotype linkage analysis enabled preimplantation genetic testing for patients carrying pathogenic inversions.

Zhang S, Liang F, Lei C, Wu J, Fu J, Yang Q, Luo X, Yu G, Wang D, Zhang Y, Lu D, Sun X, Liang Y, Xu C. Zhang S, et al. Among authors: liang f, liang y. J Med Genet. 2019 Nov;56(11):741-749. doi: 10.1136/jmedgenet-2018-105976. Epub 2019 Aug 22. J Med Genet. 2019. PMID: 31439719 Free PMC article.

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