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Page 1
The unusual structural properties and potential biological relevance of switchback DNA.
Madhanagopal BR, Talbot H, Rodriguez A, Louis JM, Zeghal H, Vangaveti S, Reddy K, Chandrasekaran AR. Madhanagopal BR, et al. Among authors: vangaveti s. bioRxiv [Preprint]. 2024 Apr 12:2023.11.15.563609. doi: 10.1101/2023.11.15.563609. bioRxiv. 2024. Update in: Nat Commun. 2024 Aug 6;15(1):6636. doi: 10.1038/s41467-024-50348-3 PMID: 38014227 Free PMC article. Updated. Preprint.
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subraman SR, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Ruiz Echartea ME, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, Dapkūnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Hon… See abstract for full author list ➔ Lensink MF, et al. Among authors: vangaveti s. Proteins. 2019 Dec;87(12):1200-1221. doi: 10.1002/prot.25838. Epub 2019 Oct 25. Proteins. 2019. PMID: 31612567 Free PMC article.
Performance of ZDOCK and IRAD in CAPRI rounds 39-45.
Vreven T, Vangaveti S, Borrman TM, Gaines JC, Weng Z. Vreven T, et al. Among authors: vangaveti s. Proteins. 2020 Aug;88(8):1050-1054. doi: 10.1002/prot.25873. Epub 2020 Feb 8. Proteins. 2020. PMID: 31994784 Free PMC article.
Toehold clipping: A mechanism for remote control of DNA strand displacement.
Faheem H, Mathivanan J, Talbot H, Zeghal H, Vangaveti S, Sheng J, Chen AA, Chandrasekaran AR. Faheem H, et al. Among authors: vangaveti s. Nucleic Acids Res. 2023 May 8;51(8):4055-4063. doi: 10.1093/nar/gkac1152. Nucleic Acids Res. 2023. PMID: 36477864 Free PMC article.
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