Huang Y - Search Results

1

Expression profiling of cerebrospinal fluid identifies dysregulated antiviral mechanisms in multiple sclerosis.

Ban M, Bredikhin D, Huang Y, Bonder MJ, Katarzyna K, Oliver AJ, Wilson NK, Coupland P, Hadfield J, Göttgens B, Madissoon E, Stegle O, Sawcer S. Ban M, et al. Among authors: huang y. Brain. 2024 Feb 1;147(2):554-565. doi: 10.1093/brain/awad404. Brain. 2024. PMID: 38038362 Free PMC article.

2

Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference.

Huang Y, McCarthy DJ, Stegle O. Huang Y, et al. Genome Biol. 2019 Dec 13;20(1):273. doi: 10.1186/s13059-019-1865-2. Genome Biol. 2019. PMID: 31836005 Free PMC article.

3

Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes.

McCarthy DJ, Rostom R, Huang Y, Kunz DJ, Danecek P, Bonder MJ, Hagai T, Lyu R; HipSci Consortium; Wang W, Gaffney DJ, Simons BD, Stegle O, Teichmann SA. McCarthy DJ, et al. Among authors: huang y. Nat Methods. 2020 Apr;17(4):414-421. doi: 10.1038/s41592-020-0766-3. Epub 2020 Mar 16. Nat Methods. 2020. PMID: 32203388

4

Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation.

Ortmann D, Brown S, Czechanski A, Aydin S, Muraro D, Huang Y, Tomaz RA, Osnato A, Canu G, Wesley BT, Skelly DA, Stegle O, Choi T, Churchill GA, Baker CL, Rugg-Gunn PJ, Munger SC, Reinholdt LG, Vallier L. Ortmann D, et al. Among authors: huang y. Cell Stem Cell. 2020 Sep 3;27(3):470-481.e6. doi: 10.1016/j.stem.2020.07.019. Epub 2020 Aug 13. Cell Stem Cell. 2020. PMID: 32795399 Free PMC article.

5

Robust analysis of allele-specific copy number alterations from scRNA-seq data with XClone.

Huang R, Huang X, Tong Y, Yan HYN, Leung SY, Stegle O, Huang Y. Huang R, et al. Among authors: huang x, huang y. Nat Commun. 2024 Aug 6;15(1):6684. doi: 10.1038/s41467-024-51026-0. Nat Commun. 2024. PMID: 39107346 Free PMC article.

6

Systematic characterization and prediction of post-translational modification cross-talk between proteins.

Huang R, Huang Y, Guo Y, Ji S, Lu M, Li T. Huang R, et al. Among authors: huang y. Bioinformatics. 2019 Aug 1;35(15):2626-2633. doi: 10.1093/bioinformatics/bty1033. Bioinformatics. 2019. PMID: 30590394

7

Organoid-based single-cell spatiotemporal gene expression landscape of human embryonic development and hematopoiesis.

Chao Y, Xiang Y, Xiao J, Zheng W, Ebrahimkhani MR, Yang C, Wu AR, Liu P, Huang Y, Sugimura R. Chao Y, et al. Among authors: huang y. Signal Transduct Target Ther. 2023 Jun 2;8(1):230. doi: 10.1038/s41392-023-01455-y. Signal Transduct Target Ther. 2023. PMID: 37264003 Free PMC article. No abstract available.

8

SpatialDM for rapid identification of spatially co-expressed ligand-receptor and revealing cell-cell communication patterns.

Li Z, Wang T, Liu P, Huang Y. Li Z, et al. Among authors: huang y. Nat Commun. 2023 Jul 6;14(1):3995. doi: 10.1038/s41467-023-39608-w. Nat Commun. 2023. PMID: 37414760 Free PMC article.

9

Systematic characterization and prediction of post-translational modification cross-talk.

Huang Y, Xu B, Zhou X, Li Y, Lu M, Jiang R, Li T. Huang Y, et al. Mol Cell Proteomics. 2015 Mar;14(3):761-70. doi: 10.1074/mcp.M114.037994. Epub 2015 Jan 20. Mol Cell Proteomics. 2015. PMID: 25605461 Free PMC article.

10

UniTVelo: temporally unified RNA velocity reinforces single-cell trajectory inference.

Gao M, Qiao C, Huang Y. Gao M, et al. Among authors: huang y. Nat Commun. 2022 Nov 3;13(1):6586. doi: 10.1038/s41467-022-34188-7. Nat Commun. 2022. PMID: 36329018 Free PMC article.

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