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DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard.
Wright A, Wilkinson MD, Mungall C, Cain S, Richards S, Sternberg P, Provin E, Jacobs JL, Geib S, Raciti D, Yook K, Stein L, Molik DC. Wright A, et al. Among authors: wilkinson md. bioRxiv [Preprint]. 2023 Dec 20:2023.11.29.569306. doi: 10.1101/2023.11.29.569306. bioRxiv. 2023. Update in: Brief Bioinform. 2024 Mar 27;25(3):bbae122. doi: 10.1093/bib/bbae122. PMID: 38076838 Free PMC article. Updated. Preprint.
FAIR Header Reference genome: a TRUSTworthy standard.
Wright A, Wilkinson MD, Mungall C, Cain S, Richards S, Sternberg P, Provin E, Jacobs JL, Geib S, Raciti D, Yook K, Stein L, Molik DC. Wright A, et al. Among authors: wilkinson md. Brief Bioinform. 2024 Mar 27;25(3):bbae122. doi: 10.1093/bib/bbae122. Brief Bioinform. 2024. PMID: 38555475
The Bioperl toolkit: Perl modules for the life sciences.
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehväslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka E, Wilkinson MD, Birney E. Stajich JE, et al. Among authors: wilkinson md. Genome Res. 2002 Oct;12(10):1611-8. doi: 10.1101/gr.361602. Genome Res. 2002. PMID: 12368254 Free PMC article.
Getting your DUCs in a row - standardising the representation of Digital Use Conditions.
Jeanson F, Gibson SJ, Alper P, Bernier A, Woolley JP, Mietchen D, Strug A, Becker R, Kamerling P, Sanchez Gonzalez MDC, Mah N, Novakowski A, Wilkinson MD, Benhamed OM, Landi A, Krog GP, Müller H, Riaz U, Veal C, Holub P, van Enckevort E, Brookes AJ. Jeanson F, et al. Among authors: wilkinson md. Sci Data. 2024 May 8;11(1):464. doi: 10.1038/s41597-024-03280-6. Sci Data. 2024. PMID: 38719839 Free PMC article.
Interoperability with Moby 1.0--it's better than sharing your toothbrush!
BioMoby Consortium; Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, Carrasco JM, Fernández JM, Shen L, Links M, Ng M, Opushneva N, Neerincx PB, Leunissen JA, Ernst R, Twigger S, Usadel B, Good B, Wong Y, Stein L, Crosby W, Karlsson J, Royo R, Párraga I, Ramírez S, Gelpi JL, Trelles O, Pisano DG, Jimenez N, Kerhornou A, Rosset R, Zamacola L, Tarraga J, Huerta-Cepas J, Carazo JM, Dopazo J, Guigo R, Navarro A, Orozco M, Valencia A, Claros MG, Pérez AJ, Aldana J, Rojano M, Fernandez-Santa Cruz R, Navas I, Schiltz G, Farmer A, Gessler D, Schoof H, Groscurth A. BioMoby Consortium, et al. Among authors: wilkinson md. Brief Bioinform. 2008 May;9(3):220-31. doi: 10.1093/bib/bbn003. Epub 2008 Jan 31. Brief Bioinform. 2008. PMID: 18238804 Review.
Common conditions of use elements. Atomic concepts for consistent and effective information governance.
Sanchez Gonzalez MDC, Kamerling P, Iermito M, Casati S, Riaz U, Veal CD, Maini M, Jeanson F, Benhamed OM, van Enckevort E, Landi A, Mimouni Y, Le Cornec C, Coviello DA, Franchin T, Fusco F, Ramírez García JA, van der Zanden LFM, Bernier A, Wilkinson MD, Mueller H, Gibson SJ, Brookes AJ. Sanchez Gonzalez MDC, et al. Among authors: wilkinson md. Sci Data. 2024 May 8;11(1):465. doi: 10.1038/s41597-024-03279-z. Sci Data. 2024. PMID: 38719810 Free PMC article.
The FAIR Guiding Principles for scientific data management and stewardship.
Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJ, Groth P, Goble C, Grethe JS, Heringa J, 't Hoen PA, Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Velterop J, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B. Wilkinson MD, et al. Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18. Sci Data. 2016. PMID: 26978244 Free PMC article.
Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base.
Rodríguez-Iglesias A, Rodríguez-González A, Irvine AG, Sesma A, Urban M, Hammond-Kosack KE, Wilkinson MD. Rodríguez-Iglesias A, et al. Among authors: wilkinson md. Front Plant Sci. 2016 May 12;7:641. doi: 10.3389/fpls.2016.00641. eCollection 2016. Front Plant Sci. 2016. PMID: 27433158 Free PMC article.
107 results