Leary JR - Search Results

1

Interpretable trajectory inference with single-cell Linear Adaptive Negative-binomial Expression (scLANE) testing.

Leary JR, Bacher R. Leary JR, et al. bioRxiv [Preprint]. 2023 Dec 20:2023.12.19.572477. doi: 10.1101/2023.12.19.572477. bioRxiv. 2023. PMID: 38187622 Free PMC article. Preprint.

2

Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference.

Dong X, Leary JR, Yang C, Brusko MA, Brusko TM, Bacher R. Dong X, et al. Among authors: leary jr. bioRxiv [Preprint]. 2023 Dec 19:2023.12.18.572214. doi: 10.1101/2023.12.18.572214. bioRxiv. 2023. Update in: Brief Bioinform. 2024 Mar 27;25(3):bbae216. doi: 10.1093/bib/bbae216 PMID: 38187768 Free PMC article. Updated. Preprint.

3

Determination of permissive and restraining cancer-associated fibroblast (DeCAF) subtypes.

Peng XL, Kharitonova EV, Xu Y, Kearney JF, Luan C, Chan PS, Hariharan A, McCabe IC, Leary JR, Morrison AB, Trembath HE, LaBella ME, Herera Loeza SG, Cliff A, Kim HJ, Belt BA, Panni RZ, Linehan DC, Damrauer JS, Iuga AC, Kim WY, Rashid NU, Yeh JJ. Peng XL, et al. Among authors: leary jr. bioRxiv [Preprint]. 2024 May 17:2024.05.14.594197. doi: 10.1101/2024.05.14.594197. bioRxiv. 2024. PMID: 38798565 Free PMC article. Preprint.

4

Unique lymphocyte transcriptomic profiles in septic patients with chronic critical illness.

Barrios EL, Balzano-Nogueira L, Polcz VE, Rodhouse C, Leary JR, Darden DB, Rincon JC, Dirain ML, Ungaro R, Nacionales DC, Larson SD, Sharma A, Upchurch G, Wallet SM, Brusko TM, Loftus TJ, Mohr AM, Maile R, Bacher R, Cai G, Kladde MP, Mathews CE, Moldawer LL, Brusko MA, Efron PA. Barrios EL, et al. Among authors: leary jr. Front Immunol. 2024 Dec 3;15:1478471. doi: 10.3389/fimmu.2024.1478471. eCollection 2024. Front Immunol. 2024. PMID: 39691721 Free PMC article.

5

Kinome state is predictive of cell viability in pancreatic cancer tumor and cancer-associated fibroblast cell lines.

Berginski ME, Jenner MR, Joisa CU, Herrera Loeza G, Golitz BT, Lipner MB, Leary JR, Rashid N, Johnson GL, Yeh JJ, Gomez SM. Berginski ME, et al. Among authors: leary jr. PeerJ. 2024 Aug 28;12:e17797. doi: 10.7717/peerj.17797. eCollection 2024. PeerJ. 2024. PMID: 39221276 Free PMC article.

6

Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference.

Dong X, Leary JR, Yang C, Brusko MA, Brusko TM, Bacher R. Dong X, et al. Among authors: leary jr. Brief Bioinform. 2024 Mar 27;25(3):bbae216. doi: 10.1093/bib/bbae216. Brief Bioinform. 2024. PMID: 38725155 Free PMC article.

7

The post-septic peripheral myeloid compartment reveals unexpected diversity in myeloid-derived suppressor cells.

Barrios EL, Leary JR, Darden DB, Rincon JC, Willis M, Polcz VE, Gillies GS, Munley JA, Dirain ML, Ungaro R, Nacionales DC, Gauthier ML, Larson SD, Morel L, Loftus TJ, Mohr AM, Maile R, Kladde MP, Mathews CE, Brusko MA, Brusko TM, Moldawer LL, Bacher R, Efron PA. Barrios EL, et al. Among authors: leary jr. Front Immunol. 2024 Apr 24;15:1355405. doi: 10.3389/fimmu.2024.1355405. eCollection 2024. Front Immunol. 2024. PMID: 38720891 Free PMC article.

8

TRANSCRIPTOMIC DIFFERENCES IN PERIPHERAL MONOCYTE POPULATIONS IN SEPTIC PATIENTS BASED ON OUTCOME.

Barrios EL, Rincon JC, Willis M, Polcz VE, Leary JR, Darden DB, Balch JA, Larson SD, Loftus TJ, Mohr AM, Wallet S, Brusko MA, Balzano-Nogueira L, Cai G, Sharma A, Upchurch GR Jr, Kladde MP, Mathews CE, Maile R, Moldawer LL, Bacher R, Efron PA. Barrios EL, et al. Among authors: leary jr. Shock. 2024 Aug 1;62(2):208-216. doi: 10.1097/SHK.0000000000002379. Epub 2024 May 2. Shock. 2024. PMID: 38713581

9

Sub-Cluster Identification through Semi-Supervised Optimization of Rare-Cell Silhouettes (SCISSORS) in single-cell RNA-sequencing.

Leary JR, Xu Y, Morrison AB, Jin C, Shen EC, Kuhlers PC, Su Y, Rashid NU, Yeh JJ, Peng XL. Leary JR, et al. Bioinformatics. 2023 Aug 1;39(8):btad449. doi: 10.1093/bioinformatics/btad449. Bioinformatics. 2023. PMID: 37498558 Free PMC article.

10

A bacterial high-affinity GABA binding protein: isolation and characterization.

Guthrie GD, Nicholson-Guthrie CS, Leary HL Jr. Guthrie GD, et al. Among authors: leary hl jr. Biochem Biophys Res Commun. 2000 Feb 5;268(1):65-8. doi: 10.1006/bbrc.1999.1960. Biochem Biophys Res Commun. 2000. PMID: 10652213

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

28 results

Search Page

Filters