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Page 1
Widespread inversions shape the genetic and phenotypic diversity in rice.
He W, He H, Yuan Q, Zhang H, Li X, Wang T, Yang Y, Yang L, Yang Y, Liu X, Wei H, Zhang H, Zhang B, Guo M, Leng Y, Shi C, Lv Y, Chen W, Wang X, Zhang Z, Yu B, Zhang B, Xu Q, Qian H, Zhou Y, Wang S, Qian Q, Shang L. He W, et al. Among authors: liu x. Sci Bull (Beijing). 2024 Mar 15;69(5):593-596. doi: 10.1016/j.scib.2023.12.048. Epub 2023 Dec 29. Sci Bull (Beijing). 2024. PMID: 38233278 Free article. No abstract available.
A super pan-genomic landscape of rice.
Shang L, Li X, He H, Yuan Q, Song Y, Wei Z, Lin H, Hu M, Zhao F, Zhang C, Li Y, Gao H, Wang T, Liu X, Zhang H, Zhang Y, Cao S, Yu X, Zhang B, Zhang Y, Tan Y, Qin M, Ai C, Yang Y, Zhang B, Hu Z, Wang H, Lv Y, Wang Y, Ma J, Wang Q, Lu H, Wu Z, Liu S, Sun Z, Zhang H, Guo L, Li Z, Zhou Y, Li J, Zhu Z, Xiong G, Ruan J, Qian Q. Shang L, et al. Among authors: liu x, liu s. Cell Res. 2022 Oct;32(10):878-896. doi: 10.1038/s41422-022-00685-z. Epub 2022 Jul 12. Cell Res. 2022. PMID: 35821092 Free PMC article.
A complete assembly of the rice Nipponbare reference genome.
Shang L, He W, Wang T, Yang Y, Xu Q, Zhao X, Yang L, Zhang H, Li X, Lv Y, Chen W, Cao S, Wang X, Zhang B, Liu X, Yu X, He H, Wei H, Leng Y, Shi C, Guo M, Zhang Z, Zhang B, Yuan Q, Qian H, Cao X, Cui Y, Zhang Q, Dai X, Liu C, Guo L, Zhou Y, Zheng X, Ruan J, Cheng Z, Pan W, Qian Q. Shang L, et al. Among authors: liu x, liu c. Mol Plant. 2023 Aug 7;16(8):1232-1236. doi: 10.1016/j.molp.2023.08.003. Epub 2023 Aug 7. Mol Plant. 2023. PMID: 37553831 Free article. No abstract available.
A rice variation map derived from 10 548 rice accessions reveals the importance of rare variants.
Wang T, He W, Li X, Zhang C, He H, Yuan Q, Zhang B, Zhang H, Leng Y, Wei H, Xu Q, Shi C, Liu X, Guo M, Wang X, Chen W, Zhang Z, Yang L, Lv Y, Qian H, Zhang B, Yu X, Liu C, Cao X, Cui Y, Zhang Q, Dai X, Guo L, Wang Y, Zhou Y, Ruan J, Qian Q, Shang L. Wang T, et al. Among authors: liu x, liu c. Nucleic Acids Res. 2023 Nov 10;51(20):10924-10933. doi: 10.1093/nar/gkad840. Nucleic Acids Res. 2023. PMID: 37843097 Free PMC article.
A centromere map based on super pan-genome highlights the structure and function of rice centromeres.
Lv Y, Liu C, Li X, Wang Y, He H, He W, Chen W, Yang L, Dai X, Cao X, Yu X, Liu J, Zhang B, Wei H, Zhang H, Qian H, Shi C, Leng Y, Liu X, Guo M, Wang X, Zhang Z, Wang T, Zhang B, Xu Q, Cui Y, Zhang Q, Yuan Q, Jahan N, Ma J, Zheng X, Zhou Y, Qian Q, Guo L, Shang L. Lv Y, et al. Among authors: liu j, liu x, liu c. J Integr Plant Biol. 2024 Feb;66(2):196-207. doi: 10.1111/jipb.13607. Epub 2024 Jan 29. J Integr Plant Biol. 2024. PMID: 38158885
Uncovering key salt-tolerant regulators through a combined eQTL and GWAS analysis using the super pan-genome in rice.
Wei H, Wang X, Zhang Z, Yang L, Zhang Q, Li Y, He H, Chen D, Zhang B, Zheng C, Leng Y, Cao X, Cui Y, Shi C, Liu Y, Lv Y, Ma J, He W, Liu X, Xu Q, Yuan Q, Yu X, Wang T, Qian H, Li X, Zhang B, Zhang H, Chen W, Guo M, Dai X, Wang Y, Zheng X, Guo L, Xie X, Qian Q, Shang L. Wei H, et al. Among authors: liu y, liu x. Natl Sci Rev. 2024 Feb 5;11(4):nwae043. doi: 10.1093/nsr/nwae043. eCollection 2024 Apr. Natl Sci Rev. 2024. PMID: 38650829 Free PMC article.
Identification of salt tolerance-associated presence-absence variations in the OsMADS56 gene through the integration of DEGs dataset and eQTL analysis.
Cui Y, Lin Y, Wei H, Pan Y, He H, Qian H, Yang L, Cao X, Zhang Z, Zeng X, Wang T, He W, Liu X, Shi C, Yuan Q, Yu X, Chen L, Wang F, Zhu Y, Qian Q, Shang L. Cui Y, et al. Among authors: liu x. New Phytol. 2024 Aug;243(3):833-838. doi: 10.1111/nph.19887. Epub 2024 Jun 6. New Phytol. 2024. PMID: 38840572 No abstract available.
Population-level exploration of alternative splicing and its unique role in controlling agronomic traits of rice.
Zhang H, Chen W, Zhu D, Zhang B, Xu Q, Shi C, He H, Dai X, Li Y, He W, Lv Y, Yang L, Cao X, Cui Y, Leng Y, Wei H, Liu X, Zhang B, Wang X, Guo M, Zhang Z, Li X, Liu C, Yuan Q, Wang T, Yu X, Qian H, Zhang Q, Chen D, Hu G, Qian Q, Shang L. Zhang H, et al. Among authors: liu x, liu c. Plant Cell. 2024 Oct 3;36(10):4372-4387. doi: 10.1093/plcell/koae181. Plant Cell. 2024. PMID: 38916914
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