Fourment M - Search Results

1

Many-core algorithms for high-dimensional gradients on phylogenetic trees.

Gangavarapu K, Ji X, Baele G, Fourment M, Lemey P, Matsen FA 4th, Suchard MA. Gangavarapu K, et al. Among authors: fourment m. Bioinformatics. 2024 Feb 1;40(2):btae030. doi: 10.1093/bioinformatics/btae030. Bioinformatics. 2024. PMID: 38243701 Free PMC article.

2

Many-core algorithms for high-dimensional gradients on phylogenetic trees.

Gangavarapu K, Ji X, Baele G, Fourment M, Lemey P, Iv FAM, Suchard MA. Gangavarapu K, et al. Among authors: fourment m. ArXiv [Preprint]. 2023 Mar 8:arXiv:2303.04390v1. ArXiv. 2023. Update in: Bioinformatics. 2024 Feb 1;40(2):btae030. doi: 10.1093/bioinformatics/btae030 PMID: 36945693 Free PMC article. Updated. Preprint.

3

Data integration in Bayesian phylogenetics.

Hassler GW, Magee A, Zhang Z, Baele G, Lemey P, Ji X, Fourment M, Suchard MA. Hassler GW, et al. Among authors: fourment m. Annu Rev Stat Appl. 2023;10:353-377. doi: 10.1146/annurev-statistics-033021-112532. Epub 2022 Sep 28. Annu Rev Stat Appl. 2023. PMID: 38774036 Free PMC article.

4

Differentiable phylogenetics via hyperbolic embeddings with Dodonaphy.

Macaulay M, Fourment M. Macaulay M, et al. Among authors: fourment m. Bioinform Adv. 2024 Jun 19;4(1):vbae082. doi: 10.1093/bioadv/vbae082. eCollection 2024. Bioinform Adv. 2024. PMID: 39132286 Free PMC article.

5

A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm.

Jun SH, Nasif H, Jennings-Shaffer C, Rich DH, Kooperberg A, Fourment M, Zhang C, Suchard MA, Matsen FA 4th. Jun SH, et al. Among authors: fourment m. Algorithms Mol Biol. 2023 Jul 31;18(1):10. doi: 10.1186/s13015-023-00235-1. Algorithms Mol Biol. 2023. PMID: 37525243 Free PMC article.

6

Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation.

Fourment M, Swanepoel CJ, Galloway JG, Ji X, Gangavarapu K, Suchard MA, Matsen Iv FA. Fourment M, et al. Genome Biol Evol. 2023 Jun 1;15(6):evad099. doi: 10.1093/gbe/evad099. Genome Biol Evol. 2023. PMID: 37265233 Free PMC article.

7

Fidelity of hyperbolic space for Bayesian phylogenetic inference.

Macaulay M, Darling A, Fourment M. Macaulay M, et al. Among authors: fourment m. PLoS Comput Biol. 2023 Apr 26;19(4):e1011084. doi: 10.1371/journal.pcbi.1011084. eCollection 2023 Apr. PLoS Comput Biol. 2023. PMID: 37099595 Free PMC article.

8

Escherichia coli ST8196 is a novel, locally evolved, and extensively drug resistant pathogenic lineage within the ST131 clonal complex.

Hastak P, Fourment M, Darling AE, Gottlieb T, Cheong E, Merlino J, Myers GSA, Djordjevic SP, Roy Chowdhury P. Hastak P, et al. Among authors: fourment m. Emerg Microbes Infect. 2020 Dec;9(1):1780-1792. doi: 10.1080/22221751.2020.1797541. Emerg Microbes Infect. 2020. PMID: 32686595 Free PMC article.

9

Local Perceptions, Vulnerability and Adaptive Responses to Climate Change and Variability in a Winegrowing Region in Uruguay.

Fourment M, Ferrer M, Barbeau G, Quénol H. Fourment M, et al. Environ Manage. 2020 Oct;66(4):590-599. doi: 10.1007/s00267-020-01330-4. Epub 2020 Jul 14. Environ Manage. 2020. PMID: 32666220

10

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics.

Fourment M, Darling AE. Fourment M, et al. PeerJ. 2019 Dec 18;7:e8272. doi: 10.7717/peerj.8272. eCollection 2019. PeerJ. 2019. PMID: 31976168 Free PMC article.

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