Yuan GC - Search Results

1

RECCIPE: A new framework assessing localized cell-cell interaction on gene expression in multicellular ST data.

Ma W, Song X, Yuan GC, Wang P. Ma W, et al. Among authors: yuan gc. Front Genet. 2024 Jan 24;15:1322886. doi: 10.3389/fgene.2024.1322886. eCollection 2024. Front Genet. 2024. PMID: 38327830 Free PMC article.

2

QuadST: A Powerful and Robust Approach for Identifying Cell-Cell Interaction-Changed Genes on Spatially Resolved Transcriptomics.

Choi J, Ehrlich ME, Roussos P, Wang P, Yuan GC, Song X. Choi J, et al. Among authors: yuan gc. bioRxiv [Preprint]. 2023 Dec 7:2023.12.04.570019. doi: 10.1101/2023.12.04.570019. bioRxiv. 2023. PMID: 38106025 Free PMC article. Preprint.

3

Orthogonal multimodality integration and clustering in single-cell data.

Liu Y, Chen Y, Lu H, Zhong W, Yuan GC, Ma P. Liu Y, et al. Among authors: yuan gc. BMC Bioinformatics. 2024 Apr 25;25(1):164. doi: 10.1186/s12859-024-05773-y. BMC Bioinformatics. 2024. PMID: 38664601 Free PMC article.

4

The landscape of human tissue and cell type specific expression and co-regulation of senescence genes.

Xu P, Wang M, Song WM, Wang Q, Yuan GC, Sudmant PH, Zare H, Tu Z, Orr ME, Zhang B. Xu P, et al. Among authors: yuan gc. Mol Neurodegener. 2022 Jan 9;17(1):5. doi: 10.1186/s13024-021-00507-7. Mol Neurodegener. 2022. PMID: 35000600 Free PMC article.

5

Guidelines for bioinformatics of single-cell sequencing data analysis in Alzheimer's disease: review, recommendation, implementation and application.

Wang M, Song WM, Ming C, Wang Q, Zhou X, Xu P, Krek A, Yoon Y, Ho L, Orr ME, Yuan GC, Zhang B. Wang M, et al. Among authors: yuan gc. Mol Neurodegener. 2022 Mar 2;17(1):17. doi: 10.1186/s13024-022-00517-z. Mol Neurodegener. 2022. PMID: 35236372 Free PMC article. Review.

6

Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystem.

Chen JG, Chávez-Fuentes JC, O'Brien M, Xu J, Ruiz E, Wang W, Amin I, Sarfraz I, Guckhool P, Sistig A, Yuan GC, Dries R. Chen JG, et al. Among authors: yuan gc. bioRxiv [Preprint]. 2023 Nov 27:2023.11.26.568752. doi: 10.1101/2023.11.26.568752. bioRxiv. 2023. PMID: 38077085 Free PMC article. Preprint.

7

WEST is an ensemble method for spatial transcriptomics analysis.

Cai J, Cheng H, Wu S, Zhong W, Yuan GC, Ma P. Cai J, et al. Among authors: yuan gc. Cell Rep Methods. 2024 Nov 18;4(11):100886. doi: 10.1016/j.crmeth.2024.100886. Epub 2024 Nov 7. Cell Rep Methods. 2024. PMID: 39515332 Free PMC article.

8

Spatial transcriptomics defines injury-specific microenvironments in the adult mouse kidney and novel cellular interactions in regeneration and disease.

Polonsky M, Gerhardt LMS, Yun J, Koppitch K, Colón KL, Amrhein H, Zheng S, Yuan GC, Thomson M, Cai L, McMahon AP. Polonsky M, et al. Among authors: yuan gc. bioRxiv [Preprint]. 2023 Nov 22:2023.11.22.568217. doi: 10.1101/2023.11.22.568217. bioRxiv. 2023. Update in: Nat Commun. 2024 Sep 5;15(1):7010. doi: 10.1038/s41467-024-51186-z PMID: 38045285 Free PMC article. Updated. Preprint.

9

Broad H3K4me3 Domain Is Associated with Spatial Coherence during Mammalian Embryonic Development.

Cao X, Ma T, Fan R, Yuan GC. Cao X, et al. Among authors: yuan gc. bioRxiv [Preprint]. 2023 Dec 12:2023.12.11.570452. doi: 10.1101/2023.12.11.570452. bioRxiv. 2023. PMID: 38168252 Free PMC article. Preprint.

10

Targeting of the CD161 inhibitory receptor enhances T-cell-mediated immunity against hematological malignancies.

Alvarez Calderon F, Kang BH, Kyrysyuk O, Zheng S, Wang H, Mathewson ND, Luoma AM, Ning X, Pyrdol J, Cao X, Suvà ML, Yuan GC, Wittrup KD, Wucherpfennig KW. Alvarez Calderon F, et al. Among authors: yuan gc. Blood. 2024 Mar 21;143(12):1124-1138. doi: 10.1182/blood.2023022882. Blood. 2024. PMID: 38153903

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