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PanEffect: a pan-genome visualization tool for variant effects in maize.
Andorf CM, Haley OC, Hayford RK, Portwood JL 2nd, Harding S, Sen S, Cannon EK, Gardiner JM, Kim HS, Woodhouse MR. Andorf CM, et al. Bioinformatics. 2024 Feb 1;40(2):btae073. doi: 10.1093/bioinformatics/btae073. Bioinformatics. 2024. PMID: 38337024 Free PMC article.
MaizeGDB: curation and outreach go hand-in-hand.
Schaeffer ML, Harper LC, Gardiner JM, Andorf CM, Campbell DA, Cannon EK, Sen TZ, Lawrence CJ. Schaeffer ML, et al. Among authors: andorf cm. Database (Oxford). 2011 May 29;2011:bar022. doi: 10.1093/database/bar022. Print 2011. Database (Oxford). 2011. PMID: 21624896 Free PMC article.
MaizeGDB becomes 'sequence-centric'.
Sen TZ, Andorf CM, Schaeffer ML, Harper LC, Sparks ME, Duvick J, Brendel VP, Cannon E, Campbell DA, Lawrence CJ. Sen TZ, et al. Among authors: andorf cm. Database (Oxford). 2009;2009:bap020. doi: 10.1093/database/bap020. Epub 2009 Dec 7. Database (Oxford). 2009. PMID: 21847242 Free PMC article.
POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data.
Cannon EK, Birkett SM, Braun BL, Kodavali S, Jennewein DM, Yilmaz A, Antonescu V, Antonescu C, Harper LC, Gardiner JM, Schaeffer ML, Campbell DA, Andorf CM, Andorf D, Lisch D, Koch KE, McCarty DR, Quackenbush J, Grotewold E, Lushbough CM, Sen TZ, Lawrence CJ. Cannon EK, et al. Among authors: andorf cm, andorf d. Int J Plant Genomics. 2011;2011:923035. doi: 10.1155/2011/923035. Epub 2011 Dec 27. Int J Plant Genomics. 2011. PMID: 22253616 Free PMC article.
MaizeGDB update: new tools, data and interface for the maize model organism database.
Andorf CM, Cannon EK, Portwood JL 2nd, Gardiner JM, Harper LC, Schaeffer ML, Braun BL, Campbell DA, Vinnakota AG, Sribalusu VV, Huerta M, Cho KT, Wimalanathan K, Richter JD, Mauch ED, Rao BS, Birkett SM, Sen TZ, Lawrence-Dill CJ. Andorf CM, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D1195-201. doi: 10.1093/nar/gkv1007. Epub 2015 Oct 1. Nucleic Acids Res. 2016. PMID: 26432828 Free PMC article.
MaizeGDB: The Maize Genetics and Genomics Database.
Harper L, Gardiner J, Andorf C, Lawrence CJ. Harper L, et al. Methods Mol Biol. 2016;1374:187-202. doi: 10.1007/978-1-4939-3167-5_9. Methods Mol Biol. 2016. PMID: 26519406
45 results