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Page 1
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Household Transmission during the Omicron Era in Massachusetts: A Prospective, Case-Ascertained Study using Genomic Epidemiology.
Banga J, Brock-Fisher T, Petros BA, Dai EY, Leonelli AT, Dobbins ST, Messer KS, Nathanson AB, Capone A, Littlehale N, Appiah-Danquah V, Dim S, Moreno GK, Crowther M, Lee KA, DeRuff KC, MacInnis BL, Springer M, Sabeti PC, Stephenson KE. Banga J, et al. Among authors: sabeti pc. medRxiv [Preprint]. 2024 Feb 7:2024.02.05.24302348. doi: 10.1101/2024.02.05.24302348. medRxiv. 2024. Update in: Open Forum Infect Dis. 2024 Oct 07;11(11):ofae591. doi: 10.1093/ofid/ofae591 PMID: 38370621 Free PMC article. Updated. Preprint.
Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa.
Djuicy DD, Omah IF, Parker E, Tomkins-Tinch CH, Otieno JR, Yifomnjou MHM, Essengue LLM, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Yonga MGW, Essima GD, Touoyem IP, Mounchili LJM, Eyangoh SI, Esso L, Nguidjol IME, Metomb SF, Chebo C, Agwe SM, Mossi HM, Bilounga CN, Etoundi AGM, Akanbi O, Egwuenu A, Ehiakhamen O, Chukwu C, Suleiman K, Akinpelu A, Ahmad A, Imam KI, Ojedele R, Oripenaye V, Ikeata K, Adelakun S, Olajumoke B, O'Toole Á, Magee A, Zeller M, Gangavarapu K, Varilly P, Park DJ, Mboowa G, Tessema SK, Tebeje YK, Folarin O, Happi A, Lemey P, Suchard MA, Andersen KG, Sabeti P, Rambaut A, Ihekweazu C, Jide I, Adetifa I, Njoum R, Happi CT. Djuicy DD, et al. medRxiv [Preprint]. 2024 Jun 19:2024.06.18.24309115. doi: 10.1101/2024.06.18.24309115. medRxiv. 2024. PMID: 38947021 Free PMC article. Preprint.
Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans.
Parker E, Omah IF, Varilly P, Magee A, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Tomkins-Tinch CH, Otieno JR, Akanbi O, Egwuenu A, Ehiakhamen O, Chukwu C, Suleiman K, Akinpelu A, Ahmad A, Imam KI, Ojedele R, Oripenaye V, Ikeata K, Adelakun S, Olajumoke B, Djuicy DD, Essengue LLM, Yifomnjou MHM, Zeller M, Gangavarapu K, O'Toole Á, Park DJ, Mboowa G, Tessema SK, Tebeje YK, Folarin O, Happi A, Lemey P, Suchard MA, Andersen KG, Sabeti P, Rambaut A, Njoum R, Ihekweazu C, Jide I, Adetifa I, Happi CT. Parker E, et al. medRxiv [Preprint]. 2024 Jun 19:2024.06.18.24309104. doi: 10.1101/2024.06.18.24309104. medRxiv. 2024. PMID: 38947052 Free PMC article. Preprint.
The HLA-II immunopeptidome of SARS-CoV-2.
Weingarten-Gabbay S, Chen DY, Sarkizova S, Taylor HB, Gentili M, Pearlman LR, Bauer MR, Rice CM, Clauser KR, Hacohen N, Carr SA, Abelin JG, Saeed M, Sabeti PC. Weingarten-Gabbay S, et al. Among authors: sabeti pc. bioRxiv [Preprint]. 2023 Jun 1:2023.05.26.542482. doi: 10.1101/2023.05.26.542482. bioRxiv. 2023. Update in: Cell Rep. 2024 Jan 23;43(1):113596. doi: 10.1016/j.celrep.2023.113596 PMID: 37398281 Free PMC article. Updated. Preprint.
Clinical Performance of Cas13a-based Point-of-Care Lateral Flow Assay for Detecting Neisseria gonorrhoeae.
Allan-Blitz LT, Sanders G, Shah P, Adams G, Jarolimova J, Ard K, Branda JA, Klausner JD, Sabeti PC, Lemieux JE. Allan-Blitz LT, et al. Among authors: sabeti pc. medRxiv [Preprint]. 2024 Mar 4:2024.03.01.24303603. doi: 10.1101/2024.03.01.24303603. medRxiv. 2024. Update in: mSphere. 2024 Dec 17:e0067724. doi: 10.1128/msphere.00677-24 PMID: 38496586 Free PMC article. Updated. Preprint.
Establishing methods to monitor H5N1 influenza virus in dairy cattle milk.
Stachler E, Gnirke A, McMahon K, Gomez M, Stenson L, Guevara-Reyes C, Knoll H, Hill T, Hill S, Messer KS, Arizti-Sanz J, Albeez F, Curtis E, Samani P, Wewior N, O'Connor DH, Vuyk W, Khoury S, Schnizlein MK, Rockey NC, Broemmel Z, Mina M, Madoff LC, Wohl S, O'Connor L, Brown CM, Ozonoff A, Park DJ, MacInnis BL, Sabeti PC. Stachler E, et al. Among authors: sabeti pc. medRxiv [Preprint]. 2024 Dec 5:2024.12.04.24318491. doi: 10.1101/2024.12.04.24318491. medRxiv. 2024. PMID: 39677482 Free PMC article. Preprint.
Polyphonia: detecting inter-sample contamination in viral genomic sequencing data.
Krasilnikova LA, Tomkins-Tinch CH, Gayton AC, Schaffner SF, Dobbins ST, Gladden-Young A, Siddle KJ, Park DJ, Sabeti PC. Krasilnikova LA, et al. Among authors: sabeti pc. Bioinformatics. 2024 Nov 28;40(12):btae698. doi: 10.1093/bioinformatics/btae698. Bioinformatics. 2024. PMID: 39673434 Free PMC article.
Severe Acute Respiratory Syndrome Coronavirus 2 Household Transmission During the Omicron Era in Massachusetts: A Prospective, Case-Ascertained Study Using Genomic Epidemiology.
Banga J, Brock-Fisher T, Petros BA, Dai EY, Leonelli AT, Dobbins ST, Messer KS, Nathanson AB, Capone A, Littlehale N, Appiah-Danquah V, Dim S, Moreno GK, Crowther M, DeRuff KC, MacInnis BL, Springer M, Sabeti PC, Stephenson KE. Banga J, et al. Among authors: sabeti pc. Open Forum Infect Dis. 2024 Oct 7;11(11):ofae591. doi: 10.1093/ofid/ofae591. eCollection 2024 Nov. Open Forum Infect Dis. 2024. PMID: 39529936 Free PMC article.
Machine-guided design of cell-type-targeting cis-regulatory elements.
Gosai SJ, Castro RI, Fuentes N, Butts JC, Mouri K, Alasoadura M, Kales S, Nguyen TTL, Noche RR, Rao AS, Joy MT, Sabeti PC, Reilly SK, Tewhey R. Gosai SJ, et al. Among authors: sabeti pc. Nature. 2024 Oct;634(8036):1211-1220. doi: 10.1038/s41586-024-08070-z. Epub 2024 Oct 23. Nature. 2024. PMID: 39443793 Free PMC article.
243 results