Tainer JA - Search Results

1

Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology.

Filandr F, Sarpe V, Raval S, Crowder DA, Khan MF, Douglas P, Coales S, Viner R, Syed A, Tainer JA, Lees-Miller SP, Schriemer DC. Filandr F, et al. Among authors: tainer ja. Nat Commun. 2024 Mar 11;15(1):2200. doi: 10.1038/s41467-024-46610-3. Nat Commun. 2024. PMID: 38467655 Free PMC article.

2

Combining small angle X-ray scattering (SAXS) with protein structure predictions to characterize conformations in solution.

Chinnam NB, Syed A, Hura GL, Hammel M, Tainer JA, Tsutakawa SE. Chinnam NB, et al. Among authors: tainer ja. Methods Enzymol. 2023;678:351-376. doi: 10.1016/bs.mie.2022.09.023. Epub 2022 Oct 31. Methods Enzymol. 2023. PMID: 36641214 Free PMC article.

3

Dynamic conformational switching underlies TFIIH function in transcription and DNA repair and impacts genetic diseases.

Yu J, Yan C, Dodd T, Tsai CL, Tainer JA, Tsutakawa SE, Ivanov I. Yu J, et al. Among authors: tainer ja. Nat Commun. 2023 May 13;14(1):2758. doi: 10.1038/s41467-023-38416-6. Nat Commun. 2023. PMID: 37179334 Free PMC article.

4

Dynamics of the DYNLL1-MRE11 complex regulate DNA end resection and recruitment of Shieldin to DSBs.

Swift ML, Zhou R, Syed A, Moreau LA, Tomasik B, Tainer JA, Konstantinopoulos PA, D'Andrea AD, He YJ, Chowdhury D. Swift ML, et al. Among authors: tainer ja. Nat Struct Mol Biol. 2023 Oct;30(10):1456-1467. doi: 10.1038/s41594-023-01074-9. Epub 2023 Sep 11. Nat Struct Mol Biol. 2023. PMID: 37696958 Free PMC article.

5

Author Correction: Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology.

Filandr F, Sarpe V, Raval S, Crowder DA, Khan MF, Douglas P, Coales S, Viner R, Syed A, Tainer JA, Lees-Miller SP, Schriemer DC. Filandr F, et al. Among authors: tainer ja. Nat Commun. 2024 Apr 2;15(1):2836. doi: 10.1038/s41467-024-47157-z. Nat Commun. 2024. PMID: 38565885 Free PMC article. No abstract available.

6

ASCC1 structures and bioinformatics reveal a novel helix-clasp-helix RNA-binding motif linked to a two-histidine phosphodiesterase.

Chinnam NB, Thapar R, Arvai AS, Sarker AH, Soll JM, Paul T, Syed A, Rosenberg DJ, Hammel M, Bacolla A, Katsonis P, Asthana A, Tsai MS, Ivanov I, Lichtarge O, Silverman RH, Mosammaparast N, Tsutakawa SE, Tainer JA. Chinnam NB, et al. Among authors: tainer ja. J Biol Chem. 2024 Jun;300(6):107368. doi: 10.1016/j.jbc.2024.107368. Epub 2024 May 14. J Biol Chem. 2024. PMID: 38750793 Free PMC article.

7

Enriched G4 forming repeats in the human genome are associated with robust well-coordinated transcription and reduced cancer transcriptome variation.

De-Paula RB, Bacolla A, Syed A, Tainer JA. De-Paula RB, et al. Among authors: tainer ja. J Biol Chem. 2024 Nov;300(11):107822. doi: 10.1016/j.jbc.2024.107822. Epub 2024 Sep 26. J Biol Chem. 2024. PMID: 39341500 Free PMC article.

8

Synthetic cationic helical polypeptides for the stimulation of antitumour innate immune pathways in antigen-presenting cells.

Lee D, Huntoon K, Wang Y, Kang M, Lu Y, Jeong SD, Link TM, Gallup TD, Qie Y, Li X, Dong S, Schrank BR, Grippin AJ, Antony A, Ha J, Chang M, An Y, Wang L, Jiang D, Li J, Koong AC, Tainer JA, Jiang W, Kim BYS. Lee D, et al. Among authors: tainer ja. Nat Biomed Eng. 2024 May;8(5):593-610. doi: 10.1038/s41551-024-01194-7. Epub 2024 Apr 19. Nat Biomed Eng. 2024. PMID: 38641710 Free PMC article.

9

A goldilocks computational protocol for inhibitor discovery targeting DNA damage responses including replication-repair functions.

Moiani D, Tainer JA. Moiani D, et al. Among authors: tainer ja. Front Mol Biosci. 2024 Nov 28;11:1442267. doi: 10.3389/fmolb.2024.1442267. eCollection 2024. Front Mol Biosci. 2024. PMID: 39669672 Free PMC article.

10

Preface.

Tainer JA. Tainer JA. Methods Enzymol. 2022;677:xv-xix. doi: 10.1016/S0076-6879(22)00453-0. Methods Enzymol. 2022. PMID: 36410964 No abstract available.

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