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Revealing Missing Protein-Ligand Interactions Using AlphaFold Predictions.
Escobedo N, Saldaño T, Mac Donagh J, Sawicki LR, Palopoli N, Alberti SF, Fornasari MS, Parisi G. Escobedo N, et al. Among authors: mac donagh j. J Mol Biol. 2024 Dec 1;436(23):168852. doi: 10.1016/j.jmb.2024.168852. Epub 2024 Nov 6. J Mol Biol. 2024. PMID: 39510344
Structured Tandem Repeats in Protein Interactions.
Mac Donagh J, Marchesini A, Spiga A, Fallico MJ, Arrías PN, Monzon AM, Vagiona AC, Gonçalves-Kulik M, Mier P, Andrade-Navarro MA. Mac Donagh J, et al. Int J Mol Sci. 2024 Mar 5;25(5):2994. doi: 10.3390/ijms25052994. Int J Mol Sci. 2024. PMID: 38474241 Free PMC article.
Impact of protein conformational diversity on AlphaFold predictions.
Saldaño T, Escobedo N, Marchetti J, Zea DJ, Mac Donagh J, Velez Rueda AJ, Gonik E, García Melani A, Novomisky Nechcoff J, Salas MN, Peters T, Demitroff N, Fernandez Alberti S, Palopoli N, Fornasari MS, Parisi G. Saldaño T, et al. Among authors: mac donagh j. Bioinformatics. 2022 May 13;38(10):2742-2748. doi: 10.1093/bioinformatics/btac202. Bioinformatics. 2022. PMID: 35561203