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Page 1
Lipid Peroxidation and Type I Interferon Coupling Fuels Pathogenic Macrophage Activation Causing Tuberculosis Susceptibility.
Yabaji SM, Zhernovkov V, Araveti PB, Lata S, Rukhlenko OS, Al Abdullatif S, Vanvalkenburg A, Alekseev Y, Ma Q, Dayama G, Lau NC, Johnson WE, Bishai WR, Crossland NA, Campbell JD, Kholodenko BN, Gimelbrant AA, Kobzik L, Kramnik I. Yabaji SM, et al. Among authors: gimelbrant aa. bioRxiv [Preprint]. 2024 Sep 25:2024.03.05.583602. doi: 10.1101/2024.03.05.583602. bioRxiv. 2024. PMID: 38496444 Free PMC article. Preprint.
Cell state transition analysis identifies interventions that improve control of M. tuberculosis infection by susceptible macrophages.
Yabaji SM, Rukhlenko OS, Chatterjee S, Bhattacharya B, Wood E, Kasaikina M, Kholodenko B, Gimelbrant AA, Kramnik I. Yabaji SM, et al. Among authors: gimelbrant aa. bioRxiv [Preprint]. 2023 Feb 10:2023.02.09.527908. doi: 10.1101/2023.02.09.527908. bioRxiv. 2023. Update in: Sci Adv. 2023 Sep 29;9(39):eadh4119. doi: 10.1126/sciadv.adh4119 PMID: 36798271 Free PMC article. Updated. Preprint.
Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale.
Mendelevich A, Gupta S, Pakharev A, Teodosiadis A, Mironov AA, Gimelbrant AA. Mendelevich A, et al. Among authors: gimelbrant aa. bioRxiv [Preprint]. 2023 Feb 12:2023.02.11.528027. doi: 10.1101/2023.02.11.528027. bioRxiv. 2023. Update in: Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i431-i439. doi: 10.1093/bioinformatics/btad254 PMID: 36798258 Free PMC article. Updated. Preprint.
RNA sequencing-based screen for reactivation of silenced alleles of autosomal genes.
Gupta S, Lafontaine DL, Vigneau S, Mendelevich A, Vinogradova S, Igarashi KJ, Bortvin A, Alves-Pereira CF, Nag A, Gimelbrant AA. Gupta S, et al. Among authors: gimelbrant aa. G3 (Bethesda). 2022 Feb 4;12(2):jkab428. doi: 10.1093/g3journal/jkab428. G3 (Bethesda). 2022. PMID: 35100361 Free PMC article.
Diversity of developing peripheral glia revealed by single-cell RNA sequencing.
Tasdemir-Yilmaz OE, Druckenbrod NR, Olukoya OO, Dong W, Yung AR, Bastille I, Pazyra-Murphy MF, Sitko AA, Hale EB, Vigneau S, Gimelbrant AA, Kharchenko PV, Goodrich LV, Segal RA. Tasdemir-Yilmaz OE, et al. Among authors: gimelbrant aa. Dev Cell. 2021 Sep 13;56(17):2516-2535.e8. doi: 10.1016/j.devcel.2021.08.005. Epub 2021 Aug 31. Dev Cell. 2021. PMID: 34469751 Free PMC article.
KDM5 Histone Demethylase Activity Links Cellular Transcriptomic Heterogeneity to Therapeutic Resistance.
Hinohara K, Wu HJ, Sébastien Vigneau, McDonald TO, Igarashi KJ, Yamamoto KN, Madsen T, Fassl A, Egri SB, Papanastasiou M, Ding L, Peluffo G, Cohen O, Kales SC, Lal-Nag M, Rai G, Maloney DJ, Jadhav A, Simeonov A, Wagle N, Brown M, Meissner A, Sicinski P, Jaffe JD, Jeselsohn R, Gimelbrant AA, Michor F, Polyak K. Hinohara K, et al. Among authors: gimelbrant aa. Cancer Cell. 2019 Feb 11;35(2):330-332. doi: 10.1016/j.ccell.2019.01.012. Cancer Cell. 2019. PMID: 30753830 Free PMC article. No abstract available.
33 results