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105 results

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DRAM for distilling microbial metabolism to automate the curation of microbiome function.
Shaffer M, Borton MA, McGivern BB, Zayed AA, La Rosa SL, Solden LM, Liu P, Narrowe AB, Rodríguez-Ramos J, Bolduc B, Gazitúa MC, Daly RA, Smith GJ, Vik DR, Pope PB, Sullivan MB, Roux S, Wrighton KC. Shaffer M, et al. Among authors: wrighton kc. Nucleic Acids Res. 2020 Sep 18;48(16):8883-8900. doi: 10.1093/nar/gkaa621. Nucleic Acids Res. 2020. PMID: 32766782 Free PMC article.
Decrypting bacterial polyphenol metabolism in an anoxic wetland soil.
McGivern BB, Tfaily MM, Borton MA, Kosina SM, Daly RA, Nicora CD, Purvine SO, Wong AR, Lipton MS, Hoyt DW, Northen TR, Hagerman AE, Wrighton KC. McGivern BB, et al. Among authors: wrighton kc. Nat Commun. 2021 Apr 29;12(1):2466. doi: 10.1038/s41467-021-22765-1. Nat Commun. 2021. PMID: 33927199 Free PMC article.
Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function.
Seitz VA, McGivern BB, Daly RA, Chaparro JM, Borton MA, Sheflin AM, Kresovich S, Shields L, Schipanski ME, Wrighton KC, Prenni JE. Seitz VA, et al. Among authors: wrighton kc. Appl Environ Microbiol. 2022 Jun 14;88(11):e0022622. doi: 10.1128/aem.00226-22. Epub 2022 May 10. Appl Environ Microbiol. 2022. PMID: 35536051 Free PMC article.
Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments.
Rodríguez-Ramos JA, Borton MA, McGivern BB, Smith GJ, Solden LM, Shaffer M, Daly RA, Purvine SO, Nicora CD, Eder EK, Lipton M, Hoyt DW, Stegen JC, Wrighton KC. Rodríguez-Ramos JA, et al. Among authors: wrighton kc. mSystems. 2022 Aug 30;7(4):e0051622. doi: 10.1128/msystems.00516-22. Epub 2022 Jul 21. mSystems. 2022. PMID: 35861508 Free PMC article.
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.
Shaffer M, Borton MA, Bolduc B, Faria JP, Flynn RM, Ghadermazi P, Edirisinghe JN, Wood-Charlson EM, Miller CS, Chan SHJ, Sullivan MB, Henry CS, Wrighton KC. Shaffer M, et al. Among authors: wrighton kc. Bioinformatics. 2023 Apr 3;39(4):btad110. doi: 10.1093/bioinformatics/btad110. Bioinformatics. 2023. PMID: 36857575 Free PMC article.
Human-Gut Phages Harbor Sporulation Genes.
Schwartz DA, Rodríguez-Ramos JA, Shaffer M, Flynn RM, Daly RA, Wrighton KC, Lennon JT. Schwartz DA, et al. Among authors: wrighton kc. mBio. 2023 Jun 27;14(3):e0018223. doi: 10.1128/mbio.00182-23. Epub 2023 Apr 12. mBio. 2023. PMID: 37042671 Free PMC article.
105 results