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R2C2 + UMI: Combining concatemeric and unique molecular identifier-based consensus sequencing enables ultra-accurate sequencing of amplicons on Oxford Nanopore Technologies sequencers.
Deng DZQ, Verhage J, Neudorf C, Corbett-Detig R, Mekonen H, Castaldi PJ, Vollmers C. Deng DZQ, et al. Among authors: corbett detig r. PNAS Nexus. 2024 Aug 21;3(9):pgae336. doi: 10.1093/pnasnexus/pgae336. eCollection 2024 Sep. PNAS Nexus. 2024. PMID: 39238604 Free PMC article.
Mixed Wolbachia infections resolve rapidly during in vitro evolution.
Mirchandani C, Wang P, Jacobs J, Genetti M, Pepper-Tunick E, Sullivan WT, Corbett-Detig R, Russell SL. Mirchandani C, et al. Among authors: corbett detig r. PLoS Pathog. 2024 Jul 25;20(7):e1012149. doi: 10.1371/journal.ppat.1012149. eCollection 2024 Jul. PLoS Pathog. 2024. PMID: 39052691 Free PMC article.
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.
Hunt M, Hinrichs AS, Anderson D, Karim L, Dearlove BL, Knaggs J, Constantinides B, Fowler PW, Rodger G, Street T, Lumley S, Webster H, Sanderson T, Ruis C, Kotzen B, de Maio N, Amenga-Etego LN, Amuzu DSY, Avaro M, Awandare GA, Ayivor-Djanie R, Barkham T, Bashton M, Batty EM, Bediako Y, De Belder D, Benedetti E, Bergthaler A, Boers SA, Campos J, Carr RAA, Chen YYC, Cuba F, Dattero ME, Dejnirattisai W, Dilthey A, Duedu KO, Endler L, Engelmann I, Francisco NM, Fuchs J, Gnimpieba EZ, Groc S, Gyamfi J, Heemskerk D, Houwaart T, Hsiao NY, Huska M, Hölzer M, Iranzadeh A, Jarva H, Jeewandara C, Jolly B, Joseph R, Kant R, Ki KKK, Kurkela S, Lappalainen M, Lataretu M, Lemieux J, Liu C, Malavige GN, Mashe T, Mongkolsapaya J, Montes B, Mora JAM, Morang'a CM, Mvula B, Nagarajan N, Nelson A, Ngoi JM, da Paixão JP, Panning M, Poklepovich T, Quashie PK, Ranasinghe D, Russo M, San JE, Sanderson ND, Scaria V, Screaton G, Sessions OM, Sironen T, Sisay A, Smith D, Smura T, Supasa P, Suphavilai C, Swann J, Tegally H, Tegomoh B, Vapalahti O, Walker A, Wilkinson RJ, Williamson C, Zair X; IMSSC2 Laboratory Network Consortium; de Oliveira T, Peto TE, Crook D, Corbett-Detig R, Iqbal Z. Hunt M, et al. Among authors: corbett detig r. bioRxiv [Preprint]. 2024 Nov 5:2024.04.29.591666. doi: 10.1101/2024.04.29.591666. bioRxiv. 2024. PMID: 38746185 Free PMC article. Preprint.
Mixed Wolbachia infections resolve rapidly during in vitro evolution.
Mirchandani C, Wang P, Jacobs J, Genetti M, Pepper-Tunick E, Sullivan WT, Corbett-Detig R, Russell SL. Mirchandani C, et al. Among authors: corbett detig r. bioRxiv [Preprint]. 2024 Mar 29:2024.03.27.586911. doi: 10.1101/2024.03.27.586911. bioRxiv. 2024. Update in: PLoS Pathog. 2024 Jul 25;20(7):e1012149. doi: 10.1371/journal.ppat.1012149 PMID: 38585949 Free PMC article. Updated. Preprint.
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method.
de Bernardi Schneider A, Su M, Hinrichs AS, Wang J, Amin H, Bell J, Wadford DA, O'Toole Á, Scher E, Perry MD, Turakhia Y, De Maio N, Hughes S, Corbett-Detig R. de Bernardi Schneider A, et al. Among authors: corbett detig r. Virus Evol. 2024 Jan 11;10(1):vead085. doi: 10.1093/ve/vead085. eCollection 2024. Virus Evol. 2024. PMID: 38361813 Free PMC article.
Limited genomic signatures of population collapse in the critically endangered black abalone (Haliotis cracherodii).
Wooldridge B, Orland C, Enbody E, Escalona M, Mirchandani C, Corbett-Detig R, Kapp JD, Fletcher N, Ammann K, Raimondi P, Shapiro B. Wooldridge B, et al. Among authors: corbett detig r. bioRxiv [Preprint]. 2024 Jan 29:2024.01.26.577275. doi: 10.1101/2024.01.26.577275. bioRxiv. 2024. Update in: Mol Ecol. 2024 Apr 29:e17362. doi: 10.1111/mec.17362 PMID: 38352393 Free PMC article. Updated. Preprint.
94 results