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The impact of package selection and versioning on single-cell RNA-seq analysis.
Rich JM, Moses L, Einarsson PH, Jackson K, Luebbert L, Booeshaghi AS, Antonsson S, Sullivan DK, Bray N, Melsted P, Pachter L. Rich JM, et al. Among authors: moses l. bioRxiv [Preprint]. 2024 Apr 11:2024.04.04.588111. doi: 10.1101/2024.04.04.588111. bioRxiv. 2024. PMID: 38617255 Free PMC article. Preprint.
Museum of spatial transcriptomics.
Moses L, Pachter L. Moses L, et al. Nat Methods. 2022 May;19(5):534-546. doi: 10.1038/s41592-022-01409-2. Epub 2022 Mar 10. Nat Methods. 2022. PMID: 35273392 Review.
kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq.
Sullivan DK, Min KHJ, Hjörleifsson KE, Luebbert L, Holley G, Moses L, Gustafsson J, Bray NL, Pimentel H, Booeshaghi AS, Melsted P, Pachter L. Sullivan DK, et al. Among authors: moses l. bioRxiv [Preprint]. 2024 Jan 23:2023.11.21.568164. doi: 10.1101/2023.11.21.568164. bioRxiv. 2024. Update in: Nat Protoc. 2024 Oct 10. doi: 10.1038/s41596-024-01057-0 PMID: 38045414 Free PMC article. Updated. Preprint.
Identification of spatial homogeneous regions in tissues with concordex.
Jackson KC, Booeshaghi AS, Gálvez-Merchán Á, Moses L, Chari T, Kim A, Pachter L. Jackson KC, et al. Among authors: moses l. bioRxiv [Preprint]. 2024 Jul 18:2023.06.28.546949. doi: 10.1101/2023.06.28.546949. bioRxiv. 2024. PMID: 39071320 Free PMC article. Preprint.
The tidyomics ecosystem: enhancing omic data analyses.
Hutchison WJ, Keyes TJ; tidyomics Consortium; Crowell HL, Serizay J, Soneson C, Davis ES, Sato N, Moses L, Tarlinton B, Nahid AA, Kosmac M, Clayssen Q, Yuan V, Mu W, Park JE, Mamede I, Ryu MH, Axisa PP, Paiz P, Poon CL, Tang M, Gottardo R, Morgan M, Lee S, Lawrence M, Hicks SC, Nolan GP, Davis KL, Papenfuss AT, Love MI, Mangiola S. Hutchison WJ, et al. Among authors: moses l. Nat Methods. 2024 Jul;21(7):1166-1170. doi: 10.1038/s41592-024-02299-2. Epub 2024 Jun 14. Nat Methods. 2024. PMID: 38877315
Long-term physical and mental health outcomes of Ebola Virus Disease survivors in Kenema District, Sierra Leone: A cross-sectional survey.
Bates JN, Kamara A, Bereteh MS, Barrera D, Moses L, Sheriff A, Sesay F, Yillah MS, Grant DS, Lamin J, Anglewicz P. Bates JN, et al. Among authors: moses l. PLOS Glob Public Health. 2024 Nov 4;4(11):e0003421. doi: 10.1371/journal.pgph.0003421. eCollection 2024. PLOS Glob Public Health. 2024. PMID: 39495749 Free PMC article.
250 results