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Page 1
Library size confounds biology in spatial transcriptomics data.
Bhuva DD, Tan CW, Salim A, Marceaux C, Pickering MA, Chen J, Kharbanda M, Jin X, Liu N, Feher K, Putri G, Tilley WD, Hickey TE, Asselin-Labat ML, Phipson B, Davis MJ. Bhuva DD, et al. Genome Biol. 2024 Apr 18;25(1):99. doi: 10.1186/s13059-024-03241-7. Genome Biol. 2024. PMID: 38637899 Free PMC article.
standR: spatial transcriptomic analysis for GeoMx DSP data.
Liu N, Bhuva DD, Mohamed A, Bokelund M, Kulasinghe A, Tan CW, Davis MJ. Liu N, et al. Among authors: bhuva dd. Nucleic Acids Res. 2024 Jan 11;52(1):e2. doi: 10.1093/nar/gkad1026. Nucleic Acids Res. 2024. PMID: 37953397 Free PMC article.
In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection.
Tan CW, Chen J, Liu N, Bhuva DD, Blick T, Monkman J, Cooper C, Kharbanda M, Feher K, Phipson B, Killingbeck EE, Pan L, Kim Y, Liang Y, Nam A, Leon M, Souza-Fonseca-Guimaraes P, Nagashima S, Camargo Martins AP, Machado-Souza C, de Noronha L, Tang B, Short K, Fraser J, Belz GT, Souza-Fonseca-Guimaraes F, Kulasinghe A, Davis MJ. Tan CW, et al. Among authors: bhuva dd. EBioMedicine. 2024 Mar;101:105016. doi: 10.1016/j.ebiom.2024.105016. Epub 2024 Feb 19. EBioMedicine. 2024. PMID: 38377798 Free PMC article.
Transcriptomic profiling of cardiac tissues from SARS-CoV-2 patients identifies DNA damage.
Kulasinghe A, Liu N, Tan CW, Monkman J, Sinclair JE, Bhuva DD, Godbolt D, Pan L, Nam A, Sadeghirad H, Sato K, Bassi GL, O'Byrne K, Hartmann C, Dos Santos Miggiolaro AFR, Marques GL, Moura LZ, Richard D, Adams M, de Noronha L, Baena CP, Suen JY, Arora R, Belz GT, Short KR, Davis MJ, Guimaraes FS, Fraser JF. Kulasinghe A, et al. Among authors: bhuva dd. Immunology. 2023 Mar;168(3):403-419. doi: 10.1111/imm.13577. Epub 2022 Sep 27. Immunology. 2023. PMID: 36107637 Free PMC article.
Spatial transcriptomic analysis of Sonic hedgehog medulloblastoma identifies that the loss of heterogeneity and promotion of differentiation underlies the response to CDK4/6 inhibition.
Vo T, Balderson B, Jones K, Ni G, Crawford J, Millar A, Tolson E, Singleton M, Kojic M, Robertson T, Walters S, Mulay O, Bhuva DD, Davis MJ, Wainwright BJ, Nguyen Q, Genovesi LA. Vo T, et al. Among authors: bhuva dd. Genome Med. 2023 May 1;15(1):29. doi: 10.1186/s13073-023-01185-4. Genome Med. 2023. PMID: 37127652 Free PMC article.
16 results