Song H-S - Search Results

1

Kinetics-based inference of environment-dependent microbial interactions and their dynamic variation.

Song H-S, Lee N-R, Kessell AK, McCullough HC, Park S-Y, Zhou K, Lee D-Y. Song H-S, et al. mSystems. 2024 May 16;9(5):e0130523. doi: 10.1128/msystems.01305-23. Epub 2024 Apr 29. mSystems. 2024. PMID: 38682902 Free PMC article.

2

Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities.

Song HS, Lee JY, Haruta S, Nelson WC, Lee DY, Lindemann SR, Fredrickson JK, Bernstein HC. Song HS, et al. Front Microbiol. 2019 Jun 11;10:1264. doi: 10.3389/fmicb.2019.01264. eCollection 2019. Front Microbiol. 2019. PMID: 31263456 Free PMC article.

3

Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data.

Lee JY, Haruta S, Kato S, Bernstein HC, Lindemann SR, Lee DY, Fredrickson JK, Song HS. Lee JY, et al. Front Microbiol. 2020 Jan 21;10:3049. doi: 10.3389/fmicb.2019.03049. eCollection 2019. Front Microbiol. 2020. PMID: 32038529 Free PMC article.

4

Genome scale metabolic models and analysis for evaluating probiotic potentials.

Choi YM, Lee YQ, Song HS, Lee DY. Choi YM, et al. Biochem Soc Trans. 2020 Aug 28;48(4):1309-1321. doi: 10.1042/BST20190668. Biochem Soc Trans. 2020. PMID: 32726414 Review.

5

Interaction Networks Are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes.

McClure R, Farris Y, Danczak R, Nelson W, Song HS, Kessell A, Lee JY, Couvillion S, Henry C, Jansson JK, Hofmockel KS. McClure R, et al. mSystems. 2022 Oct 26;7(5):e0037222. doi: 10.1128/msystems.00372-22. Epub 2022 Sep 26. mSystems. 2022. PMID: 36154140 Free PMC article.

6

Editorial: Predictive Modeling of Human Microbiota and Their Role in Health and Disease.

Song HS, Lindemann SR, Lee DY. Song HS, et al. Front Microbiol. 2021 Nov 30;12:782871. doi: 10.3389/fmicb.2021.782871. eCollection 2021. Front Microbiol. 2021. PMID: 34917060 Free PMC article. No abstract available.

7

Deep learning predicts microbial interactions from self-organized spatiotemporal patterns.

Lee JY, Sadler NC, Egbert RG, Anderton CR, Hofmockel KS, Jansson JK, Song HS. Lee JY, et al. Comput Struct Biotechnol J. 2020 May 29;18:1259-1269. doi: 10.1016/j.csbj.2020.05.023. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32612750 Free PMC article.

8

Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling.

Song HS, Stegen JC, Graham EB, Lee JY, Garayburu-Caruso VA, Nelson WC, Chen X, Moulton JD, Scheibe TD. Song HS, et al. Front Microbiol. 2020 Oct 23;11:531756. doi: 10.3389/fmicb.2020.531756. eCollection 2020. Front Microbiol. 2020. PMID: 33193121 Free PMC article.

9

Species-specific transcriptomic network inference of interspecies interactions.

McClure RS, Overall CC, Hill EA, Song HS, Charania M, Bernstein HC, McDermott JE, Beliaev AS. McClure RS, et al. ISME J. 2018 Aug;12(8):2011-2023. doi: 10.1038/s41396-018-0145-6. Epub 2018 May 24. ISME J. 2018. PMID: 29795448 Free PMC article.

10

Modeling coordinated enzymatic control of saccharification and fermentation by Clostridium thermocellum during consolidated bioprocessing of cellulose.

Ahamed F, Song HS, Ho YK. Ahamed F, et al. Biotechnol Bioeng. 2021 May;118(5):1898-1912. doi: 10.1002/bit.27705. Epub 2021 Mar 1. Biotechnol Bioeng. 2021. PMID: 33547803

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