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Phylogenomics and genetic analysis of solvent-producing Clostridium species.
Jensen RO, Schulz F, Roux S, Klingeman DM, Mitchell WP, Udwary D, Moraïs S, Reynoso V, Winkler J, Nagaraju S, De Tissera S, Shapiro N, Ivanova N, Reddy TBK, Mizrahi I, Utturkar SM, Bayer EA, Woyke T, Mouncey NJ, Jewett MC, Simpson SD, Köpke M, Jones DT, Brown SD. Jensen RO, et al. Among authors: brown sd. Sci Data. 2024 May 1;11(1):432. doi: 10.1038/s41597-024-03210-6. Sci Data. 2024. PMID: 38693191 Free PMC article.
Bacterial Differential Expression Analysis Methods.
Utturkar S, Dassanayake A, Nagaraju S, Brown SD. Utturkar S, et al. Among authors: brown sd. Methods Mol Biol. 2020;2096:89-112. doi: 10.1007/978-1-0716-0195-2_8. Methods Mol Biol. 2020. PMID: 32720149
Clostridium autoethanogenum isopropanol production via native plasmid pCA replicon.
Nogle R, Nagaraju S, Utturkar SM, Giannone RJ, Reynoso V, Leang C, Hettich RL, Mitchell WP, Simpson SD, Jewett MC, Köpke M, Brown SD. Nogle R, et al. Among authors: brown sd. Front Bioeng Biotechnol. 2022 Aug 5;10:932363. doi: 10.3389/fbioe.2022.932363. eCollection 2022. Front Bioeng Biotechnol. 2022. PMID: 36032736 Free PMC article.
Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.
Utturkar SM, Bayer EA, Borovok I, Lamed R, Hurt RA, Land ML, Klingeman DM, Elias D, Zhou J, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Brown SD. Utturkar SM, et al. Among authors: brown sd. Genome Announc. 2016 Sep 29;4(5):e01043-16. doi: 10.1128/genomeA.01043-16. Genome Announc. 2016. PMID: 27688341 Free PMC article.
1,056 results