Mu Y - Search Results

1

RmsdXNA: RMSD prediction of nucleic acid-ligand docking poses using machine-learning method.

Tan LH, Kwoh CK, Mu Y. Tan LH, et al. Among authors: mu y. Brief Bioinform. 2024 Mar 27;25(3):bbae166. doi: 10.1093/bib/bbae166. Brief Bioinform. 2024. PMID: 38695120 Free PMC article.

2

Fast, accurate, and reliable molecular docking with QuickVina 2.

Alhossary A, Handoko SD, Mu Y, Kwoh CK. Alhossary A, et al. Among authors: mu y. Bioinformatics. 2015 Jul 1;31(13):2214-6. doi: 10.1093/bioinformatics/btv082. Epub 2015 Feb 24. Bioinformatics. 2015. PMID: 25717194

3

Exploring Flexibility of Progesterone Receptor Ligand Binding Domain Using Molecular Dynamics.

Zheng L, Lin VC, Mu Y. Zheng L, et al. Among authors: mu y. PLoS One. 2016 Nov 8;11(11):e0165824. doi: 10.1371/journal.pone.0165824. eCollection 2016. PLoS One. 2016. PMID: 27824891 Free PMC article.

4

Protein-Ligand Blind Docking Using QuickVina-W With Inter-Process Spatio-Temporal Integration.

Hassan NM, Alhossary AA, Mu Y, Kwoh CK. Hassan NM, et al. Among authors: mu y. Sci Rep. 2017 Nov 13;7(1):15451. doi: 10.1038/s41598-017-15571-7. Sci Rep. 2017. PMID: 29133831 Free PMC article.

5

Proposing drug fragments for dengue virus NS5 protein.

Alhossary A, Awuni Y, Kwoh CK, Mu Y. Alhossary A, et al. Among authors: mu y. J Bioinform Comput Biol. 2018 Jun;16(3):1840017. doi: 10.1142/S0219720018400176. J Bioinform Comput Biol. 2018. PMID: 29945503

6

Improving protein-ligand docking and screening accuracies by incorporating a scoring function correction term.

Zheng L, Meng J, Jiang K, Lan H, Wang Z, Lin M, Li W, Guo H, Wei Y, Mu Y. Zheng L, et al. Among authors: mu y. Brief Bioinform. 2022 May 13;23(3):bbac051. doi: 10.1093/bib/bbac051. Brief Bioinform. 2022. PMID: 35289359 Free PMC article.

7

A fully differentiable ligand pose optimization framework guided by deep learning and a traditional scoring function.

Wang Z, Zheng L, Wang S, Lin M, Wang Z, Kong AW, Mu Y, Wei Y, Li W. Wang Z, et al. Among authors: mu y. Brief Bioinform. 2023 Jan 19;24(1):bbac520. doi: 10.1093/bib/bbac520. Brief Bioinform. 2023. PMID: 36502369

8

A new paradigm for applying deep learning to protein-ligand interaction prediction.

Wang Z, Wang S, Li Y, Guo J, Wei Y, Mu Y, Zheng L, Li W. Wang Z, et al. Among authors: mu y. Brief Bioinform. 2024 Mar 27;25(3):bbae145. doi: 10.1093/bib/bbae145. Brief Bioinform. 2024. PMID: 38581420 Free PMC article.

9

Benchmarking reverse docking through AlphaFold2 human proteome.

Luo Q, Wang S, Li HY, Zheng L, Mu Y, Guo J. Luo Q, et al. Among authors: mu y. Protein Sci. 2024 Oct;33(10):e5167. doi: 10.1002/pro.5167. Protein Sci. 2024. PMID: 39276010

10

Protein language models are performant in structure-free virtual screening.

Lam HYI, Guan JS, Ong XE, Pincket R, Mu Y. Lam HYI, et al. Among authors: mu y. Brief Bioinform. 2024 Sep 23;25(6):bbae480. doi: 10.1093/bib/bbae480. Brief Bioinform. 2024. PMID: 39327890 Free PMC article.

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