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Stochastic modelling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones.
Hirsch MG, Pal S, Mehrabadi FR, Malikic S, Gruen C, Sassano A, Pérez-Guijarro E, Merlino G, Sahinalp C, Molloy EK, Day CP, Przytycka TM. Hirsch MG, et al. Among authors: mehrabadi fr. bioRxiv [Preprint]. 2024 Apr 20:2024.04.17.588869. doi: 10.1101/2024.04.17.588869. bioRxiv. 2024. Update in: Cell Syst. 2024 Dec 18:101156. doi: 10.1016/j.cels.2024.11.013 PMID: 38712152 Free PMC article. Updated. Preprint.
Genome-wide profiling of transcription factor activity in primary liver cancer using single-cell ATAC sequencing.
Craig AJ, Silveira MAD, Ma L, Revsine M, Wang L, Heinrich S, Rae Z, Ruchinskas A, Dadkhah K, Do W, Behrens S, Mehrabadi FR, Dominguez DA, Forgues M, Budhu A, Chaisaingmongkol J, Hernandez JM, Davis JL, Tran B, Marquardt JU, Ruchirawat M, Kelly M, Greten TF, Wang XW. Craig AJ, et al. Among authors: mehrabadi fr. Cell Rep. 2023 Nov 28;42(11):113446. doi: 10.1016/j.celrep.2023.113446. Epub 2023 Nov 18. Cell Rep. 2023. PMID: 37980571 Free PMC article.
Melanoma clonal subline analysis uncovers heterogeneity-driven immunotherapy resistance mechanisms.
Gruen C, Yang HH, Sassano A, Wu E, Gopalan V, Marie KL, Castro A, Mehrabadi FR, Wu CH, Church I, Needle GA, Smith C, Chin S, Ebersole J, Marcelus C, Fon A, Liu H, Malikic S, Sahinalp C, Carter H, Hannenhalli S, Day CP, Lee MP, Merlino G, Pérez-Guijarro E. Gruen C, et al. Among authors: mehrabadi fr. bioRxiv [Preprint]. 2023 Apr 5:2023.04.03.535074. doi: 10.1101/2023.04.03.535074. bioRxiv. 2023. PMID: 37333132 Free PMC article. Preprint.