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Robust prediction of relative binding energies for protein-protein complex mutations using free energy perturbation calculations.
Sampson JM, Cannon DA, Duan J, Epstein JCK, Sergeeva AP, Katsamba PS, Mannepalli SM, Bahna FA, Adihou H, Guéret SM, Gopalakrishnan R, Geschwindner S, Rees DG, Sigurdardottir A, Wilkinson T, Dodd RB, De Maria L, Mobarec JC, Shapiro L, Honig B, Buchanan A, Friesner RA, Wang L. Sampson JM, et al. Among authors: bahna fa. bioRxiv [Preprint]. 2024 Apr 24:2024.04.22.590325. doi: 10.1101/2024.04.22.590325. bioRxiv. 2024. Update in: J Mol Biol. 2024 Aug 15;436(16):168640. doi: 10.1016/j.jmb.2024.168640. PMID: 38712280 Free PMC article. Updated. Preprint.
Structural Basis for Accommodation of Emerging B.1.351 and B.1.1.7 Variants by Two Potent SARS-CoV-2 Neutralizing Antibodies.
Cerutti G, Rapp M, Guo Y, Bahna F, Bimela J, Reddem ER, Yu J, Wang P, Liu L, Huang Y, Ho DD, Kwong PD, Sheng Z, Shapiro L. Cerutti G, et al. bioRxiv [Preprint]. 2021 Feb 22:2021.02.21.432168. doi: 10.1101/2021.02.21.432168. bioRxiv. 2021. Update in: Structure. 2021 Jul 1;29(7):655-663.e4. doi: 10.1016/j.str.2021.05.014. PMID: 33655245 Free PMC article. Updated. Preprint.
Neutralizing antibody 5-7 defines a distinct site of vulnerability in SARS-CoV-2 spike N-terminal domain.
Cerutti G, Guo Y, Wang P, Nair MS, Huang Y, Yu J, Liu L, Katsamba PS, Bahna F, Reddem ER, Kwong PD, Ho DD, Sheng Z, Shapiro L. Cerutti G, et al. bioRxiv [Preprint]. 2021 Jun 29:2021.06.29.450397. doi: 10.1101/2021.06.29.450397. bioRxiv. 2021. Update in: Cell Rep. 2021 Nov 2;37(5):109928. doi: 10.1016/j.celrep.2021.109928. PMID: 34230927 Free PMC article. Updated. Preprint.
Astrocyte morphogenesis requires self-recognition.
Zipursky S, Lee J, Sergeeva A, Ahlsen G, Mannepalli S, Bahna F, Goodman K, Khakh B, Weiner J, Shapiro L, Honig B. Zipursky S, et al. Res Sq [Preprint]. 2024 Feb 22:rs.3.rs-3932947. doi: 10.21203/rs.3.rs-3932947/v1. Res Sq. 2024. PMID: 38463964 Free PMC article. Preprint.
34 results