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Robust prediction of relative binding energies for protein-protein complex mutations using free energy perturbation calculations.
Sampson JM, Cannon DA, Duan J, Epstein JCK, Sergeeva AP, Katsamba PS, Mannepalli SM, Bahna FA, Adihou H, Guéret SM, Gopalakrishnan R, Geschwindner S, Rees DG, Sigurdardottir A, Wilkinson T, Dodd RB, De Maria L, Mobarec JC, Shapiro L, Honig B, Buchanan A, Friesner RA, Wang L. Sampson JM, et al. Among authors: sergeeva ap. bioRxiv [Preprint]. 2024 Apr 24:2024.04.22.590325. doi: 10.1101/2024.04.22.590325. bioRxiv. 2024. Update in: J Mol Biol. 2024 Aug 15;436(16):168640. doi: 10.1016/j.jmb.2024.168640. PMID: 38712280 Free PMC article. Updated. Preprint.
Molecular basis of sidekick-mediated cell-cell adhesion and specificity.
Goodman KM, Yamagata M, Jin X, Mannepalli S, Katsamba PS, Ahlsén G, Sergeeva AP, Honig B, Sanes JR, Shapiro L. Goodman KM, et al. Among authors: sergeeva ap. Elife. 2016 Sep 19;5:e19058. doi: 10.7554/eLife.19058. Elife. 2016. PMID: 27644106 Free PMC article.
Astrocyte morphogenesis requires self-recognition.
Zipursky S, Lee J, Sergeeva A, Ahlsen G, Mannepalli S, Bahna F, Goodman K, Khakh B, Weiner J, Shapiro L, Honig B. Zipursky S, et al. Res Sq [Preprint]. 2024 Feb 22:rs.3.rs-3932947. doi: 10.21203/rs.3.rs-3932947/v1. Res Sq. 2024. PMID: 38463964 Free PMC article. Preprint.
Robust Prediction of Relative Binding Energies for Protein-Protein Complex Mutations Using Free Energy Perturbation Calculations.
Sampson JM, Cannon DA, Duan J, Epstein JCK, Sergeeva AP, Katsamba PS, Mannepalli SM, Bahna FA, Adihou H, Guéret SM, Gopalakrishnan R, Geschwindner S, Rees DG, Sigurdardottir A, Wilkinson T, Dodd RB, De Maria L, Mobarec JC, Shapiro L, Honig B, Buchanan A, Friesner RA, Wang L. Sampson JM, et al. Among authors: sergeeva ap. J Mol Biol. 2024 Aug 15;436(16):168640. doi: 10.1016/j.jmb.2024.168640. Epub 2024 Jun 4. J Mol Biol. 2024. PMID: 38844044
Cis inhibition of co-expressed DIPs and Dprs shapes neural development.
Morano NC, Lopez DH, Meltzer H, Sergeeva AP, Katsamba PS, Rostam KD, Gupta HP, Becker JE, Bornstein B, Cosmanescu F, Schuldiner O, Honig B, Mann RS, Shapiro L. Morano NC, et al. Among authors: sergeeva ap. bioRxiv [Preprint]. 2024 Jun 6:2024.03.04.583391. doi: 10.1101/2024.03.04.583391. bioRxiv. 2024. PMID: 38895375 Free PMC article. Preprint.
α-Catenin-mediated cadherin clustering couples cadherin and actin dynamics.
Chen CS, Hong S, Indra I, Sergeeva AP, Troyanovsky RB, Shapiro L, Honig B, Troyanovsky SM. Chen CS, et al. Among authors: sergeeva ap. J Cell Biol. 2015 Aug 17;210(4):647-61. doi: 10.1083/jcb.201412064. Epub 2015 Aug 10. J Cell Biol. 2015. PMID: 26261181 Free PMC article.
34 results