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SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA's GenomeTrakr network.
Timme RE, Woods J, Jones JL, Calci KR, Rodriguez R, Barnes C, Leard E, Craven M, Chen H, Boerner C, Grim C, Windsor AM, Ramachandran P, Muruvanda T, Rand H, Tesfaldet B, Amirzadegan J, Kayikcioglu T, Walsky T, Allard M, Balkey M, Bias CH, Brown E, Judy K, Pfefer T, Tallent SM, Hoffmann M; GenomeTrakr Laboratory consortium; Pettengill J. Timme RE, et al. Among authors: grim c. mSystems. 2024 Jun 18;9(6):e0141523. doi: 10.1128/msystems.01415-23. Epub 2024 May 31. mSystems. 2024. PMID: 38819130 Free PMC article.
Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks.
Wilson MR, Brown E, Keys C, Strain E, Luo Y, Muruvanda T, Grim C, Jean-Gilles Beaubrun J, Jarvis K, Ewing L, Gopinath G, Hanes D, Allard MW, Musser S. Wilson MR, et al. Among authors: grim c. PLoS One. 2016 Jun 3;11(6):e0146929. doi: 10.1371/journal.pone.0146929. eCollection 2016. PLoS One. 2016. PMID: 27258142 Free PMC article.
Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak.
Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N, Hanes D, Allard M, Colwell R, Brown E, Chen Y. Ottesen A, et al. Among authors: grim c. BMC Microbiol. 2016 Nov 16;16(1):275. doi: 10.1186/s12866-016-0894-1. BMC Microbiol. 2016. PMID: 27852235 Free PMC article.
Microbiomes Associated With Foods From Plant and Animal Sources.
Jarvis KG, Daquigan N, White JR, Morin PM, Howard LM, Manetas JE, Ottesen A, Ramachandran P, Grim CJ. Jarvis KG, et al. Front Microbiol. 2018 Oct 23;9:2540. doi: 10.3389/fmicb.2018.02540. eCollection 2018. Front Microbiol. 2018. PMID: 30405589 Free PMC article.
bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting.
Konganti K, Reed E, Mammel M, Kayikcioglu T, Binet R, Jarvis K, Ferreira CM, Bell RL, Zheng J, Windsor AM, Ottesen A, Grim CJ, Ramachandran P. Konganti K, et al. Front Microbiol. 2023 Aug 2;14:1200983. doi: 10.3389/fmicb.2023.1200983. eCollection 2023. Front Microbiol. 2023. PMID: 37601366 Free PMC article.
Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities.
Kocurek B, Ramachandran P, Grim CJ, Morin P, Howard L, Ottesen A, Timme R, Leonard SR, Rand H, Strain E, Tadesse D, Pettengill JB, Lacher DW, Mammel M, Jarvis KG. Kocurek B, et al. Microbiol Spectr. 2023 Dec 12;11(6):e0148223. doi: 10.1128/spectrum.01482-23. Epub 2023 Oct 9. Microbiol Spectr. 2023. PMID: 37812012 Free PMC article.
Unveiling the genomic landscape of Salmonella enterica serotypes Typhimurium, Newport, and Infantis in Latin American surface waters: a comparative analysis.
Chen Z, Toro M, Moreno-Switt AI, Adell AD, Delgado-Suárez EJ, Bonelli RR, Oliveira CJB, Reyes-Jara A, Huang X, Albee B, Grim CJ, Allard M, Tallent SM, Brown EW, Bell RL, Meng J. Chen Z, et al. Among authors: grim cj. Microbiol Spectr. 2024 May 2;12(5):e0004724. doi: 10.1128/spectrum.00047-24. Epub 2024 Mar 28. Microbiol Spectr. 2024. PMID: 38546218 Free PMC article.
354 results