Spirin S - Search Results

1

PhyloBench: A Benchmark for Evaluating Phylogenetic Programs.

Spirin S, Sigorskikh A, Efremov A, Penzar D, Karyagina A. Spirin S, et al. Mol Biol Evol. 2024 Jun 1;41(6):msae084. doi: 10.1093/molbev/msae084. Mol Biol Evol. 2024. PMID: 38860506 Free PMC article.

2

PQ, a new program for phylogeny reconstruction.

Penzar D, Krivozubov M, Spirin S. Penzar D, et al. Among authors: spirin s. BMC Bioinformatics. 2018 Oct 12;19(1):374. doi: 10.1186/s12859-018-2399-4. BMC Bioinformatics. 2018. PMID: 30314446 Free PMC article.

3

How Often Does Filtering of Alignment Columns Improve the Phylogenetic Inference of Two-Domain Proteins?

Sigorskikh AI, Latortseva DD, Karyagina AS, Spirin SA. Sigorskikh AI, et al. Among authors: spirin sa. Biochemistry (Mosc). 2022 Dec;87(12):1689-1698. doi: 10.1134/S0006297922120239. Biochemistry (Mosc). 2022. PMID: 36717457

4

Evolution of Restriction-Modification Systems Consisting of One Restriction Endonuclease and Two DNA Methyltransferases.

Fokina AS, Karyagina AS, Rusinov IS, Moshensky DM, Spirin SA, Alexeevski AV. Fokina AS, et al. Among authors: spirin sa. Biochemistry (Mosc). 2023 Feb;88(2):253-261. doi: 10.1134/S0006297923020086. Biochemistry (Mosc). 2023. PMID: 37072330

5

An updated version of NPIDB includes new classifications of DNA-protein complexes and their families.

Zanegina O, Kirsanov D, Baulin E, Karyagina A, Alexeevski A, Spirin S. Zanegina O, et al. Among authors: spirin s. Nucleic Acids Res. 2016 Jan 4;44(D1):D144-53. doi: 10.1093/nar/gkv1339. Epub 2015 Dec 9. Nucleic Acids Res. 2016. PMID: 26656949 Free PMC article.

6

Conserved water molecules in X-ray structures highlight the role of water in intramolecular and intermolecular interactions.

Aksianov E, Zanegina O, Grishin A, Spirin S, Karyagina A, Alexeevski A. Aksianov E, et al. Among authors: spirin s. J Bioinform Comput Biol. 2008 Aug;6(4):775-88. doi: 10.1142/s0219720008003588. J Bioinform Comput Biol. 2008. PMID: 18763742

7

Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes.

Rusinov I, Ershova A, Karyagina A, Spirin S, Alexeevski A. Rusinov I, et al. Among authors: spirin s. BMC Genomics. 2015 Dec 21;16:1084. doi: 10.1186/s12864-015-2288-4. BMC Genomics. 2015. PMID: 26689194 Free PMC article.

8

Restriction-Modification systems interplay causes avoidance of GATC site in prokaryotic genomes.

Ershova A, Rusinov I, Vasiliev M, Spirin S, Karyagina A. Ershova A, et al. Among authors: spirin s. J Bioinform Comput Biol. 2016 Apr;14(2):1641003. doi: 10.1142/S0219720016410031. Epub 2016 Jan 28. J Bioinform Comput Biol. 2016. PMID: 26972562

9

Solitary restriction endonucleases in prokaryotic genomes.

Ershova AS, Karyagina AS, Vasiliev MO, Lyashchuk AM, Lunin VG, Spirin SA, Alexeevski AV. Ershova AS, et al. Among authors: spirin sa. Nucleic Acids Res. 2012 Nov 1;40(20):10107-15. doi: 10.1093/nar/gks853. Epub 2012 Sep 10. Nucleic Acids Res. 2012. PMID: 22965118 Free PMC article.

10

Is there any intron sliding in mammals?

Poverennaya IV, Potapova NA, Spirin SA. Poverennaya IV, et al. Among authors: spirin sa. BMC Evol Biol. 2020 Dec 11;20(1):164. doi: 10.1186/s12862-020-01726-0. BMC Evol Biol. 2020. PMID: 33308147 Free PMC article.

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