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High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis.
Simonyan V, Chumakov K, Dingerdissen H, Faison W, Goldweber S, Golikov A, Gulzar N, Karagiannis K, Vinh Nguyen Lam P, Maudru T, Muravitskaja O, Osipova E, Pan Y, Pschenichnov A, Rostovtsev A, Santana-Quintero L, Smith K, Thompson EE, Tkachenko V, Torcivia-Rodriguez J, Voskanian A, Wan Q, Wang J, Wu TJ, Wilson C, Mazumder R. Simonyan V, et al. Database (Oxford). 2016 Mar 17;2016:baw022. doi: 10.1093/database/baw022. Print 2016. Database (Oxford). 2016. PMID: 26989153 Free PMC article.
Identification and quantification of defective virus genomes in high throughput sequencing data using DVG-profiler, a novel post-sequence alignment processing algorithm.
Bosma TJ, Karagiannis K, Santana-Quintero L, Ilyushina N, Zagorodnyaya T, Petrovskaya S, Laassri M, Donnelly RP, Rubin S, Simonyan V, Sauder CJ. Bosma TJ, et al. PLoS One. 2019 May 17;14(5):e0216944. doi: 10.1371/journal.pone.0216944. eCollection 2019. PLoS One. 2019. PMID: 31100083 Free PMC article.
Using machine learning to improve anaphylaxis case identification in medical claims data.
Kural KC, Mazo I, Walderhaug M, Santana-Quintero L, Karagiannis K, Thompson EE, Kelman JA, Goud R. Kural KC, et al. Among authors: santana quintero l. JAMIA Open. 2023 Oct 27;6(4):ooad090. doi: 10.1093/jamiaopen/ooad090. eCollection 2023 Dec. JAMIA Open. 2023. Retraction in: JAMIA Open. 2024 Jun 21;7(2):ooae036. doi: 10.1093/jamiaopen/ooae036 PMID: 37900974 Free PMC article. Retracted.
Methodology for Good Machine Learning with Multi-Omics Data.
Coroller T, Sahiner B, Amatya A, Gossmann A, Karagiannis K, Moloney C, Samala RK, Santana-Quintero L, Solovieff N, Wang C, Amiri-Kordestani L, Cao Q, Cha KH, Charlab R, Cross FH Jr, Hu T, Huang R, Kraft J, Krusche P, Li Y, Li Z, Mazo I, Paul R, Schnakenberg S, Serra P, Smith S, Song C, Su F, Tiwari M, Vechery C, Xiong X, Zarate JP, Zhu H, Chakravartty A, Liu Q, Ohlssen D, Petrick N, Schneider JA, Walderhaug M, Zuber E. Coroller T, et al. Among authors: santana quintero l. Clin Pharmacol Ther. 2024 Apr;115(4):745-757. doi: 10.1002/cpt.3105. Epub 2024 Jan 31. Clin Pharmacol Ther. 2024. PMID: 37965805
Multiplex detection and identification of viral, bacterial, and protozoan pathogens in human blood and plasma using an expanded high-density resequencing microarray platform.
Kourout M, Espich S, Fisher C, Tiper I, Purkayastha A, Smith S, Santana-Quintero L, Duncan R. Kourout M, et al. Among authors: santana quintero l. Front Mol Biosci. 2024 Jun 20;11:1419213. doi: 10.3389/fmolb.2024.1419213. eCollection 2024. Front Mol Biosci. 2024. PMID: 38966129 Free PMC article.
Mouse embryo CoCoPUTs: novel murine transcriptomic-weighted usage website featuring multiple strains, tissues, and stages.
Fumagalli SE, Smith S, Ghazanchyan T, Meyer D, Paul R, Campbell C, Santana-Quintero L, Golikov A, Ibla J, Bar H, Komar AA, Hunt RC, Lin B, DiCuccio M, Kimchi-Sarfaty C. Fumagalli SE, et al. Among authors: santana quintero l. BMC Bioinformatics. 2024 Sep 6;25(1):294. doi: 10.1186/s12859-024-05906-3. BMC Bioinformatics. 2024. PMID: 39242990 Free PMC article.
Exposure to TNF antagonist therapies induces variations of the gut microbiota in an in vivo model using healthy mice.
Gabay O, Vicenty J, Zack-Taylor A, Tiffany L, Wunderlin G, Smith D, Reyes-Munoz L, Edwards V, Wu WW, Phue JN, Santana-Quintero L, Lam PV, Clouse KA. Gabay O, et al. Among authors: santana quintero l. Joint Bone Spine. 2020 Mar;87(2):175-178. doi: 10.1016/j.jbspin.2019.08.001. Epub 2019 Sep 9. Joint Bone Spine. 2020. PMID: 31513888 No abstract available.
17 results