Curry KD - Search Results

1

Reference-free structural variant detection in microbiomes via long-read co-assembly graphs.

Curry KD, Yu FB, Vance SE, Segarra S, Bhaya D, Chikhi R, Rocha EPC, Treangen TJ. Curry KD, et al. Bioinformatics. 2024 Jun 28;40(Suppl 1):i58-i67. doi: 10.1093/bioinformatics/btae224. Bioinformatics. 2024. PMID: 38940156 Free PMC article.

2

It takes guts to learn: machine learning techniques for disease detection from the gut microbiome.

Curry KD, Nute MG, Treangen TJ. Curry KD, et al. Emerg Top Life Sci. 2021 Dec 21;5(6):815-827. doi: 10.1042/ETLS20210213. Emerg Top Life Sci. 2021. PMID: 34779841 Free PMC article. Review.

3

Alterations to the gut microbiome after sport-related concussion in a collegiate football players cohort: A pilot study.

Soriano S, Curry K, Sadrameli SS, Wang Q, Nute M, Reeves E, Kabir R, Wiese J, Criswell A, Schodrof S, Britz GW, Gadhia R, Podell K, Treangen T, Villapol S. Soriano S, et al. Brain Behav Immun Health. 2022 Mar 1;21:100438. doi: 10.1016/j.bbih.2022.100438. eCollection 2022 May. Brain Behav Immun Health. 2022. PMID: 35284846 Free PMC article.

4

Fecal Microbiota Transplantation Derived from Alzheimer's Disease Mice Worsens Brain Trauma Outcomes in Wild-Type Controls.

Soriano S, Curry K, Wang Q, Chow E, Treangen TJ, Villapol S. Soriano S, et al. Int J Mol Sci. 2022 Apr 19;23(9):4476. doi: 10.3390/ijms23094476. Int J Mol Sci. 2022. PMID: 35562867 Free PMC article.

5

Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data.

Curry KD, Wang Q, Nute MG, Tyshaieva A, Reeves E, Soriano S, Wu Q, Graeber E, Finzer P, Mendling W, Savidge T, Villapol S, Dilthey A, Treangen TJ. Curry KD, et al. Nat Methods. 2022 Jul;19(7):845-853. doi: 10.1038/s41592-022-01520-4. Epub 2022 Jun 30. Nat Methods. 2022. PMID: 35773532 Free PMC article.

6

Analysis of bronchoalveolar lavage fluid metatranscriptomes among patients with COVID-19 disease.

Jochum M, Lee MD, Curry K, Zaksas V, Vitalis E, Treangen T, Aagaard K, Ternus KL. Jochum M, et al. Sci Rep. 2022 Dec 7;12(1):21125. doi: 10.1038/s41598-022-25463-0. Sci Rep. 2022. PMID: 36476670 Free PMC article.

7

Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs.

Curry KD, Yu FB, Vance SE, Segarra S, Bhaya D, Chikhi R, Rocha EPC, Treangen TJ. Curry KD, et al. bioRxiv [Preprint]. 2024 Jan 30:2024.01.25.577285. doi: 10.1101/2024.01.25.577285. bioRxiv. 2024. Update in: Bioinformatics. 2024 Jun 28;40(Suppl 1):i58-i67. doi: 10.1093/bioinformatics/btae224 PMID: 38352454 Free PMC article. Updated. Preprint.

8

Microbial Community Profiling Protocol with Full-length 16S rRNA Sequences and Emu.

Curry KD, Soriano S, Nute MG, Villapol S, Dilthey A, Treangen TJ. Curry KD, et al. Curr Protoc. 2024 Mar;4(3):e978. doi: 10.1002/cpz1.978. Curr Protoc. 2024. PMID: 38511467

9

Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet.

Sapoval N, Liu Y, Curry KD, Kille B, Huang W, Kokroko N, Nute MG, Tyshaieva A, Dilthey A, Molloy EK, Treangen TJ. Sapoval N, et al. Among authors: curry kd. bioRxiv [Preprint]. 2024 Aug 25:2024.06.01.596961. doi: 10.1101/2024.06.01.596961. bioRxiv. 2024. PMID: 38895276 Free PMC article. Preprint.

10

Gut microbiome dysbiosis and immune activation correlate with somatic and neuropsychiatric symptoms in COVID-19 patients: Microbiome dysbiosis linked to COVID-19 symptoms.

Scalzo PL, Marshall A, Soriano S, Curry K, Dulay M, Hodics T, Quigley EM, Treangen TJ, Piskorz MM, Villapol S. Scalzo PL, et al. medRxiv [Preprint]. 2024 Nov 19:2024.11.18.24317428. doi: 10.1101/2024.11.18.24317428. medRxiv. 2024. PMID: 39606341 Free PMC article. Preprint.

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