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A pan-TE map highlights transposable elements underlying domestication and agronomic traits in Asian rice.
Li X, Dai X, He H, Lv Y, Yang L, He W, Liu C, Wei H, Liu X, Yuan Q, Wang X, Wang T, Zhang B, Zhang H, Chen W, Leng Y, Yu X, Qian H, Zhang B, Guo M, Zhang Z, Shi C, Zhang Q, Cui Y, Xu Q, Cao X, Chen D, Zhou Y, Qian Q, Shang L. Li X, et al. Among authors: xu q. Natl Sci Rev. 2024 Jun 4;11(6):nwae188. doi: 10.1093/nsr/nwae188. eCollection 2024 Jun. Natl Sci Rev. 2024. PMID: 38962716 Free PMC article.
A rice variation map derived from 10 548 rice accessions reveals the importance of rare variants.
Wang T, He W, Li X, Zhang C, He H, Yuan Q, Zhang B, Zhang H, Leng Y, Wei H, Xu Q, Shi C, Liu X, Guo M, Wang X, Chen W, Zhang Z, Yang L, Lv Y, Qian H, Zhang B, Yu X, Liu C, Cao X, Cui Y, Zhang Q, Dai X, Guo L, Wang Y, Zhou Y, Ruan J, Qian Q, Shang L. Wang T, et al. Among authors: xu q. Nucleic Acids Res. 2023 Nov 10;51(20):10924-10933. doi: 10.1093/nar/gkad840. Nucleic Acids Res. 2023. PMID: 37843097 Free PMC article.
A centromere map based on super pan-genome highlights the structure and function of rice centromeres.
Lv Y, Liu C, Li X, Wang Y, He H, He W, Chen W, Yang L, Dai X, Cao X, Yu X, Liu J, Zhang B, Wei H, Zhang H, Qian H, Shi C, Leng Y, Liu X, Guo M, Wang X, Zhang Z, Wang T, Zhang B, Xu Q, Cui Y, Zhang Q, Yuan Q, Jahan N, Ma J, Zheng X, Zhou Y, Qian Q, Guo L, Shang L. Lv Y, et al. Among authors: xu q. J Integr Plant Biol. 2024 Feb;66(2):196-207. doi: 10.1111/jipb.13607. Epub 2024 Jan 29. J Integr Plant Biol. 2024. PMID: 38158885
Uncovering key salt-tolerant regulators through a combined eQTL and GWAS analysis using the super pan-genome in rice.
Wei H, Wang X, Zhang Z, Yang L, Zhang Q, Li Y, He H, Chen D, Zhang B, Zheng C, Leng Y, Cao X, Cui Y, Shi C, Liu Y, Lv Y, Ma J, He W, Liu X, Xu Q, Yuan Q, Yu X, Wang T, Qian H, Li X, Zhang B, Zhang H, Chen W, Guo M, Dai X, Wang Y, Zheng X, Guo L, Xie X, Qian Q, Shang L. Wei H, et al. Among authors: xu q. Natl Sci Rev. 2024 Feb 5;11(4):nwae043. doi: 10.1093/nsr/nwae043. eCollection 2024 Apr. Natl Sci Rev. 2024. PMID: 38650829 Free PMC article.
Population-level exploration of alternative splicing and its unique role in controlling agronomic traits of rice.
Zhang H, Chen W, Zhu D, Zhang B, Xu Q, Shi C, He H, Dai X, Li Y, He W, Lv Y, Yang L, Cao X, Cui Y, Leng Y, Wei H, Liu X, Zhang B, Wang X, Guo M, Zhang Z, Li X, Liu C, Yuan Q, Wang T, Yu X, Qian H, Zhang Q, Chen D, Hu G, Qian Q, Shang L. Zhang H, et al. Among authors: xu q. Plant Cell. 2024 Oct 3;36(10):4372-4387. doi: 10.1093/plcell/koae181. Plant Cell. 2024. PMID: 38916914
The pan-tandem repeat map highlights multiallelic variants underlying gene expression and agronomic traits in rice.
He H, Leng Y, Cao X, Zhu Y, Li X, Yuan Q, Zhang B, He W, Wei H, Liu X, Xu Q, Guo M, Zhang H, Yang L, Lv Y, Wang X, Shi C, Zhang Z, Chen W, Zhang B, Wang T, Yu X, Qian H, Zhang Q, Dai X, Liu C, Cui Y, Wang Y, Zheng X, Xiong G, Zhou Y, Qian Q, Shang L. He H, et al. Among authors: xu q. Nat Commun. 2024 Aug 24;15(1):7291. doi: 10.1038/s41467-024-51854-0. Nat Commun. 2024. PMID: 39181885 Free PMC article.
Two independent allohexaploidizations and genomic fractionation in Solanales.
Zhang Y, Zhang L, Xiao Q, Wu C, Zhang J, Xu Q, Yu Z, Bao S, Wang J, Li Y, Wang L, Wang J. Zhang Y, et al. Among authors: xu q. Front Plant Sci. 2022 Sep 23;13:1001402. doi: 10.3389/fpls.2022.1001402. eCollection 2022. Front Plant Sci. 2022. PMID: 36212355 Free PMC article.
Evolution of self-compatibility by a mutant Sm-RNase in citrus.
Liang M, Cao Z, Zhu A, Liu Y, Tao M, Yang H, Xu Q Jr, Wang S, Liu J, Li Y, Chen C, Xie Z, Deng C, Ye J, Guo W, Xu Q, Xia R, Larkin RM, Deng X, Bosch M, Franklin-Tong VE, Chai L. Liang M, et al. Among authors: xu q jr, xu q. Nat Plants. 2020 Feb;6(2):131-142. doi: 10.1038/s41477-020-0597-3. Epub 2020 Feb 13. Nat Plants. 2020. PMID: 32055045 Free PMC article.
A common whole-genome paleotetraploidization in Cucurbitales.
Wang J, Yuan M, Feng Y, Zhang Y, Bao S, Hao Y, Ding Y, Gao X, Yu Z, Xu Q, Zhao J, Zhu Q, Wang P, Wu C, Wang J, Li Y, Xu C, Wang J. Wang J, et al. Among authors: xu q, xu c. Plant Physiol. 2022 Nov 28;190(4):2430-2448. doi: 10.1093/plphys/kiac410. Plant Physiol. 2022. PMID: 36053177 Free PMC article.
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