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Page 1
DEAD box RNA helicases are pervasive protein kinase interactors and activators.
Hirth A, Fatti E, Netz E, Acebron SP, Papageorgiou D, Švorinić A, Cruciat CM, Karaulanov E, Gopanenko A, Zhu T, Sinning I, Krijgsveld J, Kohlbacher O, Niehrs C. Hirth A, et al. Among authors: kohlbacher o. Genome Res. 2024 Jul 23;34(6):952-966. doi: 10.1101/gr.278264.123. Genome Res. 2024. PMID: 38986579 Free PMC article.
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics.
Vizcaíno JA, Mayer G, Perkins S, Barsnes H, Vaudel M, Perez-Riverol Y, Ternent T, Uszkoreit J, Eisenacher M, Fischer L, Rappsilber J, Netz E, Walzer M, Kohlbacher O, Leitner A, Chalkley RJ, Ghali F, Martínez-Bartolomé S, Deutsch EW, Jones AR. Vizcaíno JA, et al. Among authors: kohlbacher o. Mol Cell Proteomics. 2017 Jul;16(7):1275-1285. doi: 10.1074/mcp.M117.068429. Epub 2017 May 17. Mol Cell Proteomics. 2017. PMID: 28515314 Free PMC article.
Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.
Leitner A, Bonvin AMJJ, Borchers CH, Chalkley RJ, Chamot-Rooke J, Combe CW, Cox J, Dong MQ, Fischer L, Götze M, Gozzo FC, Heck AJR, Hoopmann MR, Huang L, Ishihama Y, Jones AR, Kalisman N, Kohlbacher O, Mechtler K, Moritz RL, Netz E, Novak P, Petrotchenko E, Sali A, Scheltema RA, Schmidt C, Schriemer D, Sinz A, Sobott F, Stengel F, Thalassinos K, Urlaub H, Viner R, Vizcaíno JA, Wilkins MR, Rappsilber J. Leitner A, et al. Among authors: kohlbacher o. Structure. 2020 Nov 3;28(11):1259-1268. doi: 10.1016/j.str.2020.09.011. Epub 2020 Oct 15. Structure. 2020. PMID: 33065067 Free article.
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data.
Pfeuffer J, Bielow C, Wein S, Jeong K, Netz E, Walter A, Alka O, Nilse L, Colaianni PD, McCloskey D, Kim J, Rosenberger G, Bichmann L, Walzer M, Veit J, Boudaud B, Bernt M, Patikas N, Pilz M, Startek MP, Kutuzova S, Heumos L, Charkow J, Sing JC, Feroz A, Siraj A, Weisser H, Dijkstra TMH, Perez-Riverol Y, Röst H, Kohlbacher O, Sachsenberg T. Pfeuffer J, et al. Among authors: kohlbacher o. Nat Methods. 2024 Mar;21(3):365-367. doi: 10.1038/s41592-024-02197-7. Nat Methods. 2024. PMID: 38366242 No abstract available.
Genetic variation in human drug-related genes.
Schärfe CPI, Tremmel R, Schwab M, Kohlbacher O, Marks DS. Schärfe CPI, et al. Among authors: kohlbacher o. Genome Med. 2017 Dec 22;9(1):117. doi: 10.1186/s13073-017-0502-5. Genome Med. 2017. PMID: 29273096 Free PMC article.
Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma.
Löffler MW, Mohr C, Bichmann L, Freudenmann LK, Walzer M, Schroeder CM, Trautwein N, Hilke FJ, Zinser RS, Mühlenbruch L, Kowalewski DJ, Schuster H, Sturm M, Matthes J, Riess O, Czemmel S, Nahnsen S, Königsrainer I, Thiel K, Nadalin S, Beckert S, Bösmüller H, Fend F, Velic A, Maček B, Haen SP, Buonaguro L, Kohlbacher O, Stevanović S, Königsrainer A; HEPAVAC Consortium; Rammensee HG. Löffler MW, et al. Among authors: kohlbacher o. Genome Med. 2019 Apr 30;11(1):28. doi: 10.1186/s13073-019-0636-8. Genome Med. 2019. PMID: 31039795 Free PMC article.
Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid-protein interaction sites by mass spectrometry.
Welp LM, Sachsenberg T, Wulf A, Chernev A, Horokhovskyi Y, Neumann P, Pašen M, Siraj A, Raabe M, Johannsson S, Schmitzova J, Netz E, Pfeuffer J, He Y, Fritzemeier K, Delanghe B, Viner R, Vos SM, Cramer P, Ficner R, Liepe J, Kohlbacher O, Urlaub H. Welp LM, et al. Among authors: kohlbacher o. bioRxiv [Preprint]. 2024 Aug 29:2024.08.29.610268. doi: 10.1101/2024.08.29.610268. bioRxiv. 2024. PMID: 39257782 Free PMC article. Preprint.
263 results