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Page 1
Unlocking plant genetics with telomere-to-telomere genome assemblies.
Garg V, Bohra A, Mascher M, Spannagl M, Xu X, Bevan MW, Bennetzen JL, Varshney RK. Garg V, et al. Among authors: bennetzen jl. Nat Genet. 2024 Sep;56(9):1788-1799. doi: 10.1038/s41588-024-01830-7. Epub 2024 Jul 24. Nat Genet. 2024. PMID: 39048791 Review.
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii.
Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, Van SL, Yuan L, Wang Z, Xia Z, Xiao L, Anderson OD, Ouyang S, Liang Y, Zimin AV, Pertea G, Qi P, Bennetzen JL, Dai X, Dawson MW, Müller HG, Kugler K, Rivarola-Duarte L, Spannagl M, Mayer KFX, Lu FH, Bevan MW, Leroy P, Li P, You FM, Sun Q, Liu Z, Lyons E, Wicker T, Salzberg SL, Devos KM, Dvořák J. Luo MC, et al. Among authors: bennetzen jl. Nature. 2017 Nov 23;551(7681):498-502. doi: 10.1038/nature24486. Epub 2017 Nov 15. Nature. 2017. PMID: 29143815 Free PMC article.
A chickpea genetic variation map based on the sequencing of 3,366 genomes.
Varshney RK, Roorkiwal M, Sun S, Bajaj P, Chitikineni A, Thudi M, Singh NP, Du X, Upadhyaya HD, Khan AW, Wang Y, Garg V, Fan G, Cowling WA, Crossa J, Gentzbittel L, Voss-Fels KP, Valluri VK, Sinha P, Singh VK, Ben C, Rathore A, Punna R, Singh MK, Tar'an B, Bharadwaj C, Yasin M, Pithia MS, Singh S, Soren KR, Kudapa H, Jarquín D, Cubry P, Hickey LT, Dixit GP, Thuillet AC, Hamwieh A, Kumar S, Deokar AA, Chaturvedi SK, Francis A, Howard R, Chattopadhyay D, Edwards D, Lyons E, Vigouroux Y, Hayes BJ, von Wettberg E, Datta SK, Yang H, Nguyen HT, Wang J, Siddique KHM, Mohapatra T, Bennetzen JL, Xu X, Liu X. Varshney RK, et al. Among authors: bennetzen jl. Nature. 2021 Nov;599(7886):622-627. doi: 10.1038/s41586-021-04066-1. Epub 2021 Nov 10. Nature. 2021. PMID: 34759320 Free PMC article.
Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement.
Garg V, Dudchenko O, Wang J, Khan AW, Gupta S, Kaur P, Han K, Saxena RK, Kale SM, Pham M, Yu J, Chitikineni A, Zhang Z, Fan G, Lui C, Valluri V, Meng F, Bhandari A, Liu X, Yang T, Chen H, Valliyodan B, Roorkiwal M, Shi C, Yang HB, Durand NC, Pandey MK, Li G, Barmukh R, Wang X, Chen X, Lam HM, Jiang H, Zong X, Liang X, Liu X, Liao B, Guo B, Jackson S, Nguyen HT, Zhuang W, Shubo W, Wang X, Aiden EL, Bennetzen JL, Varshney RK. Garg V, et al. Among authors: bennetzen jl. J Adv Res. 2022 Dec;42:315-329. doi: 10.1016/j.jare.2021.10.009. Epub 2021 Nov 3. J Adv Res. 2022. PMID: 36513421 Free PMC article.
Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.
Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X. Varshney RK, et al. Among authors: bennetzen jl. Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18. Nat Biotechnol. 2017. PMID: 28922347 Free PMC article.
Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes.
Varshney RK, Roorkiwal M, Sun S, Bajaj P, Chitikineni A, Thudi M, Singh NP, Du X, Upadhyaya HD, Khan AW, Wang Y, Garg V, Fan G, Cowling WA, Crossa J, Gentzbittel L, Voss-Fels KP, Valluri VK, Sinha P, Singh VK, Ben C, Rathore A, Punna R, Singh MK, Tar'an B, Bharadwaj C, Yasin M, Pithia MS, Singh S, Soren KR, Kudapa H, Jarquín D, Cubry P, Hickey LT, Dixit GP, Thuillet AC, Hamwieh A, Kumar S, Deokar AA, Chaturvedi SK, Francis A, Howard R, Chattopadhyay D, Edwards D, Lyons E, Vigouroux Y, Hayes BJ, von Wettberg E, Datta SK, Yang H, Nguyen HT, Wang J, Siddique KHM, Mohapatra T, Bennetzen JL, Xu X, Liu X. Varshney RK, et al. Among authors: bennetzen jl. Nature. 2022 Apr;604(7905):E12. doi: 10.1038/s41586-022-04660-x. Nature. 2022. PMID: 35338354 Free PMC article. No abstract available.
5Gs for crop genetic improvement.
Varshney RK, Sinha P, Singh VK, Kumar A, Zhang Q, Bennetzen JL. Varshney RK, et al. Among authors: bennetzen jl. Curr Opin Plant Biol. 2020 Aug;56:190-196. doi: 10.1016/j.pbi.2019.12.004. Epub 2020 Jan 28. Curr Opin Plant Biol. 2020. PMID: 32005553 Free PMC article. Review.
Aegilops tauschii genome assembly Aet v5.0 features greater sequence contiguity and improved annotation.
Wang L, Zhu T, Rodriguez JC, Deal KR, Dubcovsky J, McGuire PE, Lux T, Spannagl M, Mayer KFX, Baldrich P, Meyers BC, Huo N, Gu YQ, Zhou H, Devos KM, Bennetzen JL, Unver T, Budak H, Gulick PJ, Galiba G, Kalapos B, Nelson DR, Li P, You FM, Luo MC, Dvorak J. Wang L, et al. Among authors: bennetzen jl. G3 (Bethesda). 2021 Dec 8;11(12):jkab325. doi: 10.1093/g3journal/jkab325. G3 (Bethesda). 2021. PMID: 34515796 Free PMC article.
Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance.
Ma PF, Liu YL, Guo C, Jin G, Guo ZH, Mao L, Yang YZ, Niu LZ, Wang YJ, Clark LG, Kellogg EA, Xu ZC, Ye XY, Liu JX, Zhou MY, Luo Y, Yang Y, Soltis DE, Bennetzen JL, Soltis PS, Li DZ. Ma PF, et al. Among authors: bennetzen jl. Nat Genet. 2024 Apr;56(4):710-720. doi: 10.1038/s41588-024-01683-0. Epub 2024 Mar 15. Nat Genet. 2024. PMID: 38491323 Free PMC article.
219 results