Iwasaki W - Search Results

1

SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models.

Cosentino S, Sriswasdi S, Iwasaki W. Cosentino S, et al. Among authors: iwasaki w. Genome Biol. 2024 Jul 25;25(1):195. doi: 10.1186/s13059-024-03298-4. Genome Biol. 2024. PMID: 39054525 Free PMC article.

2

Global deceleration of gene evolution following recent genome hybridizations in fungi.

Sriswasdi S, Takashima M, Manabe R, Ohkuma M, Sugita T, Iwasaki W. Sriswasdi S, et al. Among authors: iwasaki w. Genome Res. 2016 Aug;26(8):1081-90. doi: 10.1101/gr.205948.116. Epub 2016 Jul 20. Genome Res. 2016. PMID: 27440871 Free PMC article.

3

A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved 'natural' hybrid genomes.

Takashima M, Sriswasdi S, Manabe RI, Ohkuma M, Sugita T, Iwasaki W. Takashima M, et al. Among authors: iwasaki w. Yeast. 2018 Jan;35(1):99-111. doi: 10.1002/yea.3284. Epub 2017 Dec 6. Yeast. 2018. PMID: 29027707

4

Generalist species drive microbial dispersion and evolution.

Sriswasdi S, Yang CC, Iwasaki W. Sriswasdi S, et al. Among authors: iwasaki w. Nat Commun. 2017 Oct 27;8(1):1162. doi: 10.1038/s41467-017-01265-1. Nat Commun. 2017. PMID: 29079803 Free PMC article.

5

SonicParanoid: fast, accurate and easy orthology inference.

Cosentino S, Iwasaki W. Cosentino S, et al. Among authors: iwasaki w. Bioinformatics. 2019 Jan 1;35(1):149-151. doi: 10.1093/bioinformatics/bty631. Bioinformatics. 2019. PMID: 30032301 Free PMC article.

6

Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales.

Takashima M, Manabe RI, Nishimura Y, Endoh R, Ohkuma M, Sriswasdi S, Sugita T, Iwasaki W. Takashima M, et al. Among authors: iwasaki w. Fungal Genet Biol. 2019 Sep;130:31-42. doi: 10.1016/j.fgb.2019.04.013. Epub 2019 Apr 23. Fungal Genet Biol. 2019. PMID: 31026590

7

Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi.

Sriswasdi S, Takashima M, Manabe RI, Ohkuma M, Iwasaki W. Sriswasdi S, et al. Among authors: iwasaki w. Commun Biol. 2019 Jul 19;2:263. doi: 10.1038/s42003-019-0515-2. eCollection 2019. Commun Biol. 2019. PMID: 31341962 Free PMC article.

8

The Quest for Orthologs benchmark service and consensus calls in 2020.

Altenhoff AM, Garrayo-Ventas J, Cosentino S, Emms D, Glover NM, Hernández-Plaza A, Nevers Y, Sundesha V, Szklarczyk D, Fernández JM, Codó L, For Orthologs Consortium TQ, Gelpi JL, Huerta-Cepas J, Iwasaki W, Kelly S, Lecompte O, Muffato M, Martin MJ, Capella-Gutierrez S, Thomas PD, Sonnhammer E, Dessimoz C. Altenhoff AM, et al. Among authors: iwasaki w. Nucleic Acids Res. 2020 Jul 2;48(W1):W538-W545. doi: 10.1093/nar/gkaa308. Nucleic Acids Res. 2020. PMID: 32374845 Free PMC article.

9

Ten Years of Collaborative Progress in the Quest for Orthologs.

Linard B, Ebersberger I, McGlynn SE, Glover N, Mochizuki T, Patricio M, Lecompte O, Nevers Y, Thomas PD, Gabaldón T, Sonnhammer E, Dessimoz C, Uchiyama I; QFO Consortium. Linard B, et al. Mol Biol Evol. 2021 Jul 29;38(8):3033-3045. doi: 10.1093/molbev/msab098. Mol Biol Evol. 2021. PMID: 33822172 Free PMC article.

10

Piwi-piRNA complexes induce stepwise changes in nuclear architecture at target loci.

Iwasaki YW, Sriswasdi S, Kinugasa Y, Adachi J, Horikoshi Y, Shibuya A, Iwasaki W, Tashiro S, Tomonaga T, Siomi H. Iwasaki YW, et al. Among authors: iwasaki w. EMBO J. 2021 Sep 15;40(18):e108345. doi: 10.15252/embj.2021108345. Epub 2021 Aug 2. EMBO J. 2021. PMID: 34337769 Free PMC article.

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