Deutsch EW - Search Results

1

The Zea mays PeptideAtlas: A New Maize Community Resource.

van Wijk KJ, Leppert T, Sun Z, Guzchenko I, Debley E, Sauermann G, Routray P, Mendoza L, Sun Q, Deutsch EW. van Wijk KJ, et al. Among authors: deutsch ew. J Proteome Res. 2024 Sep 6;23(9):3984-4004. doi: 10.1021/acs.jproteome.4c00320. Epub 2024 Aug 5. J Proteome Res. 2024. PMID: 39101213

2

Improving mass and liquid chromatography based identification of proteins using bayesian scoring.

Chen SS, Deutsch EW, Yi EC, Li XJ, Goodlett DR, Aebersold R. Chen SS, et al. Among authors: deutsch ew. J Proteome Res. 2005 Nov-Dec;4(6):2174-84. doi: 10.1021/pr050251c. J Proteome Res. 2005. PMID: 16335964

3

Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage.

Van PT, Schmid AK, King NL, Kaur A, Pan M, Whitehead K, Koide T, Facciotti MT, Goo YA, Deutsch EW, Reiss DJ, Mallick P, Baliga NS. Van PT, et al. Among authors: deutsch ew. J Proteome Res. 2008 Sep;7(9):3755-64. doi: 10.1021/pr800031f. Epub 2008 Jul 25. J Proteome Res. 2008. PMID: 18652504 Free PMC article.

4

MaRiMba: a software application for spectral library-based MRM transition list assembly.

Sherwood CA, Eastham A, Lee LW, Peterson A, Eng JK, Shteynberg D, Mendoza L, Deutsch EW, Risler J, Tasman N, Aebersold R, Lam H, Martin DB. Sherwood CA, et al. Among authors: deutsch ew. J Proteome Res. 2009 Oct;8(10):4396-405. doi: 10.1021/pr900010h. J Proteome Res. 2009. PMID: 19603829 Free PMC article.

5

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets.

Deutsch EW, Shteynberg D, Lam H, Sun Z, Eng JK, Carapito C, von Haller PD, Tasman N, Mendoza L, Farrah T, Aebersold R. Deutsch EW, et al. Proteomics. 2010 Mar;10(6):1190-5. doi: 10.1002/pmic.200900567. Proteomics. 2010. PMID: 20082347 Free PMC article.

6

A guided tour of the Trans-Proteomic Pipeline.

Deutsch EW, Mendoza L, Shteynberg D, Farrah T, Lam H, Tasman N, Sun Z, Nilsson E, Pratt B, Prazen B, Eng JK, Martin DB, Nesvizhskii AI, Aebersold R. Deutsch EW, et al. Proteomics. 2010 Mar;10(6):1150-9. doi: 10.1002/pmic.200900375. Proteomics. 2010. PMID: 20101611 Free PMC article. Review.

7

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.

Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz JE, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R. Farrah T, et al. Among authors: deutsch ew. Mol Cell Proteomics. 2011 Sep;10(9):M110.006353. doi: 10.1074/mcp.M110.006353. Epub 2011 Jun 1. Mol Cell Proteomics. 2011. PMID: 21632744 Free PMC article.

8

A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues.

Chan QW, Parker R, Sun Z, Deutsch EW, Foster LJ. Chan QW, et al. Among authors: deutsch ew. BMC Genomics. 2011 Jun 3;12:290. doi: 10.1186/1471-2164-12-290. BMC Genomics. 2011. PMID: 21639908 Free PMC article.

9

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates.

Shteynberg D, Deutsch EW, Lam H, Eng JK, Sun Z, Tasman N, Mendoza L, Moritz RL, Aebersold R, Nesvizhskii AI. Shteynberg D, et al. Among authors: deutsch ew. Mol Cell Proteomics. 2011 Dec;10(12):M111.007690. doi: 10.1074/mcp.M111.007690. Epub 2011 Aug 29. Mol Cell Proteomics. 2011. PMID: 21876204 Free PMC article.

10

TraML--a standard format for exchange of selected reaction monitoring transition lists.

Deutsch EW, Chambers M, Neumann S, Levander F, Binz PA, Shofstahl J, Campbell DS, Mendoza L, Ovelleiro D, Helsens K, Martens L, Aebersold R, Moritz RL, Brusniak MY. Deutsch EW, et al. Mol Cell Proteomics. 2012 Apr;11(4):R111.015040. doi: 10.1074/mcp.R111.015040. Epub 2011 Dec 12. Mol Cell Proteomics. 2012. PMID: 22159873 Free PMC article.

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