Johnson TS - Search Results

1

Enhanced microglial dynamics and a paucity of tau seeding in the amyloid plaque microenvironment contribute to cognitive resilience in Alzheimer's disease.

Jury-Garfe N, Redding-Ochoa J, You Y, Martínez P, Karahan H, Chimal-Juárez E, Johnson TS, Zhang J, Resnick S, Kim J, Troncoso JC, Lasagna-Reeves CA. Jury-Garfe N, et al. Among authors: johnson ts. Acta Neuropathol. 2024 Aug 5;148(1):15. doi: 10.1007/s00401-024-02775-1. Acta Neuropathol. 2024. PMID: 39102080 Free PMC article.

2

Topological Methods for Visualization and Analysis of High Dimensional Single-Cell RNA Sequencing Data.

Wang T, Johnson T, Zhang J, Huang K. Wang T, et al. Pac Symp Biocomput. 2019;24:350-361. Pac Symp Biocomput. 2019. PMID: 30963074 Free PMC article.

3

Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing.

Johnson TS, Xiang S, Helm BR, Abrams ZB, Neidecker P, Machiraju R, Zhang Y, Huang K, Zhang J. Johnson TS, et al. Sci Rep. 2020 Oct 22;10(1):18014. doi: 10.1038/s41598-020-74917-w. Sci Rep. 2020. PMID: 33093481 Free PMC article.

4

Combinatorial analyses reveal cellular composition changes have different impacts on transcriptomic changes of cell type specific genes in Alzheimer's Disease.

Johnson TS, Xiang S, Dong T, Huang Z, Cheng M, Wang T, Yang K, Ni D, Huang K, Zhang J. Johnson TS, et al. Sci Rep. 2021 Jan 11;11(1):353. doi: 10.1038/s41598-020-79740-x. Sci Rep. 2021. PMID: 33432017 Free PMC article.

5

ParsVNN: parsimony visible neural networks for uncovering cancer-specific and drug-sensitive genes and pathways.

Huang X, Huang K, Johnson T, Radovich M, Zhang J, Ma J, Wang Y. Huang X, et al. NAR Genom Bioinform. 2021 Oct 27;3(4):lqab097. doi: 10.1093/nargab/lqab097. eCollection 2021 Dec. NAR Genom Bioinform. 2021. PMID: 34729476 Free PMC article.

6

Optimal transport- and kernel-based early detection of mild cognitive impairment patients based on magnetic resonance and positron emission tomography images.

Liu Z, Johnson TS, Shao W, Zhang M, Zhang J, Huang K. Liu Z, et al. Among authors: johnson ts. Alzheimers Res Ther. 2022 Jan 7;14(1):4. doi: 10.1186/s13195-021-00915-3. Alzheimers Res Ther. 2022. PMID: 34996518 Free PMC article.

7

Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease.

Johnson TS, Yu CY, Huang Z, Xu S, Wang T, Dong C, Shao W, Zaid MA, Huang X, Wang Y, Bartlett C, Zhang Y, Walker BA, Liu Y, Huang K, Zhang J. Johnson TS, et al. Genome Med. 2022 Feb 1;14(1):11. doi: 10.1186/s13073-022-01012-2. Genome Med. 2022. PMID: 35105355 Free PMC article.

8

Enhanced microglial dynamics and paucity of tau seeding in the amyloid plaque microenvironment contributes to cognitive resilience in Alzheimer's disease.

Jury-Garfe N, You Y, Martínez P, Redding-Ochoa J, Karahan H, Johnson TS, Zhang J, Kim J, Troncoso JC, Lasagna-Reeves CA. Jury-Garfe N, et al. Among authors: johnson ts. bioRxiv [Preprint]. 2023 Jul 28:2023.07.27.550884. doi: 10.1101/2023.07.27.550884. bioRxiv. 2023. Update in: Acta Neuropathol. 2024 Aug 5;148(1):15. doi: 10.1007/s00401-024-02775-1 PMID: 37546928 Free PMC article. Updated. Preprint.

9

Gradient boosting reveals spatially diverse cholesterol gene signatures in colon cancer.

Yang X, Chatterjee D, Couetil JL, Liu Z, Ardon VD, Chen C, Zhang J, Huang K, Johnson TS. Yang X, et al. Among authors: johnson ts. Front Genet. 2024 Nov 29;15:1410353. doi: 10.3389/fgene.2024.1410353. eCollection 2024. Front Genet. 2024. PMID: 39678375 Free PMC article.

10

LAmbDA: label ambiguous domain adaptation dataset integration reduces batch effects and improves subtype detection.

Johnson TS, Wang T, Huang Z, Yu CY, Wu Y, Han Y, Zhang Y, Huang K, Zhang J. Johnson TS, et al. Bioinformatics. 2019 Nov 1;35(22):4696-4706. doi: 10.1093/bioinformatics/btz295. Bioinformatics. 2019. PMID: 31038689 Free PMC article.

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