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GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.
Carbonetto P, Luo K, Sarkar A, Hung A, Tayeb K, Pott S, Stephens M. Carbonetto P, et al. Among authors: stephens m. bioRxiv [Preprint]. 2023 Sep 14:2023.03.03.531029. doi: 10.1101/2023.03.03.531029. bioRxiv. 2023. Update in: Genome Biol. 2023 Oct 19;24(1):236. doi: 10.1186/s13059-023-03067-9. PMID: 36945441 Free PMC article. Updated. Preprint.
A pairwise cytokine code explains the organism-wide response to sepsis.
Takahama M, Patil A, Richey G, Cipurko D, Johnson K, Carbonetto P, Plaster M, Pandey S, Cheronis K, Ueda T, Gruenbaum A, Kawamoto T, Stephens M, Chevrier N. Takahama M, et al. Among authors: stephens m. Nat Immunol. 2024 Feb;25(2):226-239. doi: 10.1038/s41590-023-01722-8. Epub 2024 Jan 8. Nat Immunol. 2024. PMID: 38191855 Free PMC article.
Empirical Bayes Matrix Factorization.
Wang W, Stephens M. Wang W, et al. Among authors: stephens m. J Mach Learn Res. 2021;22:120. J Mach Learn Res. 2021. PMID: 37920532 Free PMC article.
1,347 results