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Diversity of Shiga toxin transducing phages in Escherichia coli O145:H28 and the different Shiga toxin 2 production levels associated with short- or long-tailed phages.
Nakamura K, Taniguchi I, Gotoh Y, Isobe J, Kimata K, Igawa Y, Kitahashi T, Takahashi Y, Nomoto R, Iwabuchi K, Morimoto Y, Iyoda S, Hayashi T. Nakamura K, et al. Front Microbiol. 2024 Aug 6;15:1453887. doi: 10.3389/fmicb.2024.1453887. eCollection 2024. Front Microbiol. 2024. PMID: 39165568 Free PMC article.
Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28.
Nakamura K, Murase K, Sato MP, Toyoda A, Itoh T, Mainil JG, Piérard D, Yoshino S, Kimata K, Isobe J, Seto K, Etoh Y, Narimatsu H, Saito S, Yatsuyanagi J, Lee K, Iyoda S, Ohnishi M, Ooka T, Gotoh Y, Ogura Y, Hayashi T. Nakamura K, et al. Microb Genom. 2020 Jan;6(1):e000323. doi: 10.1099/mgen.0.000323. Microb Genom. 2020. PMID: 31935184 Free PMC article.
The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing Escherichia coli O121:H19.
Nishida R, Nakamura K, Taniguchi I, Murase K, Ooka T, Ogura Y, Gotoh Y, Itoh T, Toyoda A, Mainil JG, Piérard D, Seto K, Harada T, Isobe J, Kimata K, Etoh Y, Hamasaki M, Narimatsu H, Yatsuyanagi J, Kameyama M, Matsumoto Y, Nagai Y, Kawase J, Yokoyama E, Ishikawa K, Shiomoto T, Lee K, Kang D, Akashi K, Ohnishi M, Iyoda S, Hayashi T. Nishida R, et al. Among authors: nakamura k. Microb Genom. 2021 Dec;7(12):000716. doi: 10.1099/mgen.0.000716. Microb Genom. 2021. PMID: 34878971 Free PMC article.
Insertion Sequence (IS)-Excision Enhancer (IEE)-Mediated IS Excision from the lacZ Gene Restores the Lactose Utilization Defect of Shiga Toxin-Producing Escherichia coli O121:H19 Strains and Is Responsible for Their Delayed Lactose Utilization Phenotype.
Nakamura K, Seto K, Isobe J, Taniguchi I, Gotoh Y, Hayashi T. Nakamura K, et al. Appl Environ Microbiol. 2022 Aug 23;88(16):e0076022. doi: 10.1128/aem.00760-22. Epub 2022 Aug 1. Appl Environ Microbiol. 2022. PMID: 35913153 Free PMC article.
Global population structure, genomic diversity and carbohydrate fermentation characteristics of clonal complex 119 (CC119), an understudied Shiga toxin-producing E. coli (STEC) lineage including O165:H25 and O172:H25.
Nakamura K, Seto K, Lee K, Ooka T, Gotoh Y, Taniguchi I, Ogura Y, Mainil JG, Piérard D, Harada T, Etoh Y, Ueda S, Hamasaki M, Isobe J, Kimata K, Narimatsu H, Yatsuyanagi J, Ohnishi M, Iyoda S, Hayashi T. Nakamura K, et al. Microb Genom. 2023 Mar;9(3):mgen000959. doi: 10.1099/mgen.0.000959. Microb Genom. 2023. PMID: 36951916 Free PMC article.
Nationwide analysis of antimicrobial resistance in pathogenic Escherichia coli strains isolated from diseased swine over 29 years in Japan.
Kusumoto M, Tamamura-Andoh Y, Hikoda-Kogiku Y, Magome A, Okuhama E, Sato K, Mizuno Y, Arai N, Watanabe-Yanai A, Iwata T, Ogura Y, Gotoh Y, Nakamura K, Hayashi T, Akiba M. Kusumoto M, et al. Among authors: nakamura k. Front Microbiol. 2023 Mar 17;14:1107566. doi: 10.3389/fmicb.2023.1107566. eCollection 2023. Front Microbiol. 2023. PMID: 37007495 Free PMC article.
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