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Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis.
Aygün N, Elwell AL, Liang D, Lafferty MJ, Cheek KE, Courtney KP, Mory J, Hadden-Ford E, Krupa O, de la Torre-Ubieta L, Geschwind DH, Love MI, Stein JL. Aygün N, et al. Among authors: krupa o. Am J Hum Genet. 2021 Sep 2;108(9):1647-1668. doi: 10.1016/j.ajhg.2021.07.011. Epub 2021 Aug 19. Am J Hum Genet. 2021. PMID: 34416157 Free PMC article.
Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation.
Liang D, Elwell AL, Aygün N, Krupa O, Wolter JM, Kyere FA, Lafferty MJ, Cheek KE, Courtney KP, Yusupova M, Garrett ME, Ashley-Koch A, Crawford GE, Love MI, de la Torre-Ubieta L, Geschwind DH, Stein JL. Liang D, et al. Among authors: krupa o. Nat Neurosci. 2021 Jul;24(7):941-953. doi: 10.1038/s41593-021-00858-w. Epub 2021 May 20. Nat Neurosci. 2021. PMID: 34017130 Free PMC article.
Focus on your locus with a massively parallel reporter assay.
McAfee JC, Bell JL, Krupa O, Matoba N, Stein JL, Won H. McAfee JC, et al. Among authors: krupa o. J Neurodev Disord. 2022 Sep 9;14(1):50. doi: 10.1186/s11689-022-09461-x. J Neurodev Disord. 2022. PMID: 36085003 Free PMC article. Review.
Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants.
McAfee JC, Lee S, Lee J, Bell JL, Krupa O, Davis J, Insigne K, Bond ML, Zhao N, Boyle AP, Phanstiel DH, Love MI, Stein JL, Ruzicka WB, Davila-Velderrain J, Kosuri S, Won H. McAfee JC, et al. Among authors: krupa o. Cell Genom. 2023 Sep 15;3(10):100404. doi: 10.1016/j.xgen.2023.100404. eCollection 2023 Oct 11. Cell Genom. 2023. PMID: 37868037 Free PMC article.
Segmentor: a tool for manual refinement of 3D microscopy annotations.
Borland D, McCormick CM, Patel NK, Krupa O, Mory JT, Beltran AA, Farah TM, Escobar-Tomlienovich CF, Olson SS, Kim M, Wu G, Stein JL. Borland D, et al. Among authors: krupa o. BMC Bioinformatics. 2021 May 22;22(1):260. doi: 10.1186/s12859-021-04202-8. BMC Bioinformatics. 2021. PMID: 34022787 Free PMC article.
16 results