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Visual Support for the Loop Grafting Workflow on Proteins.
Opaleny F, Ulbrich P, Planas-Iglesias J, Byska J, Stourac J, Bednar D, Furmanova K, Kozlikova B. Opaleny F, et al. Among authors: planas iglesias j. IEEE Trans Vis Comput Graph. 2024 Sep 10;PP. doi: 10.1109/TVCG.2024.3456401. Online ahead of print. IEEE Trans Vis Comput Graph. 2024. PMID: 39255099
A computational workflow for analysis of missense mutations in precision oncology.
Khan RT, Pokorna P, Stourac J, Borko S, Arefiev I, Planas-Iglesias J, Dobias A, Pinto G, Szotkowska V, Sterba J, Slaby O, Damborsky J, Mazurenko S, Bednar D. Khan RT, et al. Among authors: planas iglesias j. J Cheminform. 2024 Jul 29;16(1):86. doi: 10.1186/s13321-024-00876-3. J Cheminform. 2024. PMID: 39075588 Free PMC article.
Analysis of mutations in precision oncology using the automated, accurate, and user-friendly web tool PredictONCO.
Khan RT, Pokorna P, Stourac J, Borko S, Dobias A, Planas-Iglesias J, Mazurenko S, Arefiev I, Pinto G, Szotkowska V, Sterba J, Damborsky J, Slaby O, Bednar D. Khan RT, et al. Among authors: planas iglesias j. Comput Struct Biotechnol J. 2024 Nov 14;24:734-738. doi: 10.1016/j.csbj.2024.11.026. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39687752 Free PMC article.
Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer's Disease drug candidate.
Nemergut M, Marques SM, Uhrik L, Vanova T, Nezvedova M, Gadara DC, Jha D, Tulis J, Novakova V, Planas-Iglesias J, Kunka A, Legrand A, Hribkova H, Pospisilova V, Sedmik J, Raska J, Prokop Z, Damborsky J, Bohaciakova D, Spacil Z, Hernychova L, Bednar D, Marek M. Nemergut M, et al. Among authors: planas iglesias j. Mol Neurodegener. 2023 Jun 6;18(1):38. doi: 10.1186/s13024-023-00620-9. Mol Neurodegener. 2023. PMID: 37280636 Free PMC article.
CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules.
Marques SM, Kouba P, Legrand A, Sedlar J, Disson L, Planas-Iglesias J, Sanusi Z, Kunka A, Damborsky J, Pajdla T, Prokop Z, Mazurenko S, Sivic J, Bednar D. Marques SM, et al. Among authors: planas iglesias j. JACS Au. 2024 May 28;4(6):2228-2245. doi: 10.1021/jacsau.4c00182. eCollection 2024 Jun 24. JACS Au. 2024. PMID: 38938816 Free PMC article.
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning.
Stourac J, Borko S, Khan RT, Pokorna P, Dobias A, Planas-Iglesias J, Mazurenko S, Pinto G, Szotkowska V, Sterba J, Slaby O, Damborsky J, Bednar D. Stourac J, et al. Among authors: planas iglesias j. Brief Bioinform. 2023 Nov 22;25(1):bbad441. doi: 10.1093/bib/bbad441. Brief Bioinform. 2023. PMID: 38066711 Free PMC article.
SBILib: a handle for protein modeling and engineering.
Gohl P, Bonet J, Fornes O, Planas-Iglesias J, Fernandez-Fuentes N, Oliva B. Gohl P, et al. Among authors: planas iglesias j. Bioinformatics. 2023 Oct 3;39(10):btad613. doi: 10.1093/bioinformatics/btad613. Bioinformatics. 2023. PMID: 37796837 Free PMC article.
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering.
Planas-Iglesias J, Opaleny F, Ulbrich P, Stourac J, Sanusi Z, Pinto GP, Schenkmayerova A, Byska J, Damborsky J, Kozlikova B, Bednar D. Planas-Iglesias J, et al. Nucleic Acids Res. 2022 Jul 5;50(W1):W465-W473. doi: 10.1093/nar/gkac249. Nucleic Acids Res. 2022. PMID: 35438789 Free PMC article.
41 results