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Page 1
Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow Pipeline.
Patel Y, Zhu C, Yamaguchi TN, Wang N, Wiltsie N, Gonzalez A, Winata H, Zeltser N, Pan Y, Mootor MFE, Sanders T, Kandoth C, Fitz-Gibbon ST, Livingstone J, Liu LY, Carlin B, Holmes A, Oh J, Sahrmann J, Tao S, Eng S, Hugh-White R, Pashminehazar K, Park A, Beshlikyan A, Jordan M, Wu S, Tian M, Arbet J, Neilsen B, Bugh YZ, Kim G, Salmingo J, Zhang W, Haas R, Anand A, Hwang E, Neiman-Golden A, Steinberg P, Zhao W, Anand P, Tsai BL, Boutros PC. Patel Y, et al. Among authors: arbet j. bioRxiv [Preprint]. 2025 Jan 13:2024.09.04.611267. doi: 10.1101/2024.09.04.611267. bioRxiv. 2025. PMID: 39282325 Free PMC article. Preprint.
Molecular Hallmarks of Prostate-specific Membrane Antigen in Treatment-naïve Prostate Cancer.
Weiner AB, Agrawal R, Wang NK, Sonni I, Li EV, Arbet J, Zhang JJH, Proudfoot JA, Hong BH, Davicioni E, Kane N, Valle LF, Kishan AU, Pra AD, Ghadjar P, Sweeney CJ, Nickols NG, Karnes RJ, Shen J, Rettig MB, Czernin J, Ross AE, Lee Kiang Chua M, Schaeffer EM, Calais J, Boutros PC, Reiter RE. Weiner AB, et al. Among authors: arbet j. Eur Urol. 2024 Dec;86(6):579-587. doi: 10.1016/j.eururo.2024.09.005. Epub 2024 Sep 17. Eur Urol. 2024. PMID: 39294048 Free PMC article.
De-escalation of Monitoring in Active Surveillance for Prostate Cancer: Results from the GAP3 Consortium.
Tohi Y, Sahrmann JM, Arbet J, Kato T, Lee LS, Peacock M, Ginsburg K, Pavlovich C, Carroll P, Bangma CH, Sugimoto M, Boutros PC; Global Action Plan Prostate Cancer Active Surveillance (GAP3) Consortium. Tohi Y, et al. Among authors: arbet j. Eur Urol Oncol. 2024 Jul 31:S2588-9311(24)00179-2. doi: 10.1016/j.euo.2024.07.006. Online ahead of print. Eur Urol Oncol. 2024. PMID: 39089946
StableLift: Optimized Germline and Somatic Variant Detection Across Genome Builds.
Wang NK, Wiltsie N, Winata HK, Fitz-Gibbon S, Gonzalez AE, Zeltser N, Agrawal R, Oh J, Arbet J, Patel Y, Yamaguchi TN, Boutros PC. Wang NK, et al. Among authors: arbet j. bioRxiv [Preprint]. 2024 Nov 3:2024.10.31.621401. doi: 10.1101/2024.10.31.621401. bioRxiv. 2024. PMID: 39554127 Free PMC article. Preprint.
Limitations of Clustering with PCA and Correlated Noise.
Lippitt W, Carlson NE, Arbet J, Fingerlin TE, Maier LA, Kechris K. Lippitt W, et al. Among authors: arbet j. J Stat Comput Simul. 2024;94(10):2291-2319. doi: 10.1080/00949655.2024.2329976. Epub 2024 May 5. J Stat Comput Simul. 2024. PMID: 39176071
32 results