Zhang J - Search Results

1

Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data.

Zhang J, Liu L, Wei X, Zhao C, Luo Y, Li J, Le TD. Zhang J, et al. BMC Biol. 2024 Sep 27;22(1):218. doi: 10.1186/s12915-024-02020-x. BMC Biol. 2024. PMID: 39334271 Free PMC article.

2

Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data.

Zhang J, Le TD, Liu L, Liu B, He J, Goodall GJ, Li J. Zhang J, et al. Bioinformatics. 2014 Nov 1;30(21):3070-7. doi: 10.1093/bioinformatics/btu489. Epub 2014 Jul 23. Bioinformatics. 2014. PMID: 25061069 Free PMC article.

3

Identifying direct miRNA-mRNA causal regulatory relationships in heterogeneous data.

Zhang J, Le TD, Liu L, Liu B, He J, Goodall GJ, Li J. Zhang J, et al. J Biomed Inform. 2014 Dec;52:438-47. doi: 10.1016/j.jbi.2014.08.005. Epub 2014 Aug 30. J Biomed Inform. 2014. PMID: 25181465 Free article.

4

Ensemble Methods for MiRNA Target Prediction from Expression Data.

Le TD, Zhang J, Liu L, Li J. Le TD, et al. Among authors: zhang j. PLoS One. 2015 Jun 26;10(6):e0131627. doi: 10.1371/journal.pone.0131627. eCollection 2015. PLoS One. 2015. PMID: 26114448 Free PMC article.

5

A novel framework for inferring condition-specific TF and miRNA co-regulation of protein-protein interactions.

Zhang J, Le TD, Liu L, He J, Li J. Zhang J, et al. Gene. 2016 Feb 10;577(1):55-64. doi: 10.1016/j.gene.2015.11.023. Epub 2015 Nov 27. Gene. 2016. PMID: 26611531

6

Identifying miRNA synergistic regulatory networks in heterogeneous human data via network motifs.

Zhang J, Duy Le T, Liu L, He J, Li J. Zhang J, et al. Mol Biosyst. 2016 Feb;12(2):454-63. doi: 10.1039/c5mb00562k. Mol Biosyst. 2016. PMID: 26660849

7

miRLAB: An R Based Dry Lab for Exploring miRNA-mRNA Regulatory Relationships.

Le TD, Zhang J, Liu L, Liu H, Li J. Le TD, et al. Among authors: zhang j. PLoS One. 2015 Dec 30;10(12):e0145386. doi: 10.1371/journal.pone.0145386. eCollection 2015. PLoS One. 2015. PMID: 26716983 Free PMC article.

8

Computational methods for identifying miRNA sponge interactions.

Le TD, Zhang J, Liu L, Li J. Le TD, et al. Among authors: zhang j. Brief Bioinform. 2017 Jul 1;18(4):577-590. doi: 10.1093/bib/bbw042. Brief Bioinform. 2017. PMID: 27273287 Review.

9

Identifying miRNA sponge modules using biclustering and regulatory scores.

Zhang J, Le TD, Liu L, Li J. Zhang J, et al. BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):44. doi: 10.1186/s12859-017-1467-5. BMC Bioinformatics. 2017. PMID: 28361682 Free PMC article.

10

Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer.

Zhang J, Le TD, Liu L, Li J. Zhang J, et al. BMC Bioinformatics. 2017 May 8;18(1):243. doi: 10.1186/s12859-017-1672-2. BMC Bioinformatics. 2017. PMID: 28482794 Free PMC article.

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