Stöcker T - Search Results

1

NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling.

Hanssen F, Gabernet G, Bäuerle F, Stöcker B, Wiegand F, Smith NH, Mertes C, Neogi AG, Brandhoff L, Ossowski A, Altmueller J, Becker K, Petzold A, Sturm M, Stöcker T, Sivalingam S, Brand F, Schmidt A, Buness A, Probst AJ, Motameny S, Köster J. Hanssen F, et al. Among authors: stocker b, stocker t. F1000Res. 2024 Sep 12;12:1125. doi: 10.12688/f1000research.140344.1. eCollection 2023. F1000Res. 2024. PMID: 39345270 Free PMC article.

2

A2TEA: Identifying trait-specific evolutionary adaptations.

Stöcker T, Uebermuth-Feldhaus C, Boecker F, Schoof H. Stöcker T, et al. F1000Res. 2023 Apr 12;11:1137. doi: 10.12688/f1000research.126463.2. eCollection 2022. F1000Res. 2023. PMID: 37224329 Free PMC article.

3

MuWU: Mutant-seq library analysis and annotation.

Stöcker T, Altrogge L, Marcon C, Win YN, Hochholdinger F, Schoof H. Stöcker T, et al. Bioinformatics. 2022 Jan 12;38(3):837-838. doi: 10.1093/bioinformatics/btab679. Bioinformatics. 2022. PMID: 34586393 Free PMC article.

4

BonnMu: A Sequence-Indexed Resource of Transposon-Induced Maize Mutations for Functional Genomics Studies.

Marcon C, Altrogge L, Win YN, Stöcker T, Gardiner JM, Portwood JL 2nd, Opitz N, Kortz A, Baldauf JA, Hunter CT, McCarty DR, Koch KE, Schoof H, Hochholdinger F. Marcon C, et al. Among authors: stocker t. Plant Physiol. 2020 Oct;184(2):620-631. doi: 10.1104/pp.20.00478. Epub 2020 Aug 7. Plant Physiol. 2020. PMID: 32769162 Free PMC article.

5

Cold mediates maize root hair developmental plasticity via epidermis-specific transcriptomic responses.

Zhou Y, Sommer ML, Meyer A, Wang D, Klaus A, Stöcker T, Marcon C, Schoof H, Haberer G, Schön CC, Yu P, Hochholdinger F. Zhou Y, et al. Among authors: stocker t. Plant Physiol. 2024 Nov 4;196(3):2105-2120. doi: 10.1093/plphys/kiae449. Plant Physiol. 2024. PMID: 39190817

6

Transcriptome profiling at the transition to the reproductive stage uncovers stage and tissue-specific genes in wheat.

Benaouda S, Stöcker T, Schoof H, Léon J, Ballvora A. Benaouda S, et al. Among authors: stocker t. BMC Plant Biol. 2023 Jan 12;23(1):25. doi: 10.1186/s12870-022-03986-y. BMC Plant Biol. 2023. PMID: 36631761 Free PMC article.

7

Expanding the BonnMu sequence-indexed repository of transposon induced maize (Zea mays L.) mutations in dent and flint germplasm.

Win YN, Stöcker T, Du X, Brox A, Pitz M, Klaus A, Piepho HP, Schoof H, Hochholdinger F, Marcon C. Win YN, et al. Among authors: stocker t. Plant J. 2024 Dec;120(5):2253-2268. doi: 10.1111/tpj.17088. Epub 2024 Oct 25. Plant J. 2024. PMID: 39453608 Free PMC article.

8

Identification of Transposon Insertion Sites in Maize Mu-Tagged Mutants Using Mu-Seq.

Marcon C, Brox A, Win YN, Stöcker T, Du X, Schoof H, Hochholdinger F. Marcon C, et al. Among authors: stocker t. Cold Spring Harb Protoc. 2024 Sep 9. doi: 10.1101/pdb.prot108586. Online ahead of print. Cold Spring Harb Protoc. 2024. PMID: 39251335

9

Changes in wax composition but not amount enhance cuticular transpiration.

Grünhofer P, Herzig L, Zhang Q, Vitt S, Stöcker T, Malkowsky Y, Brügmann T, Fladung M, Schreiber L. Grünhofer P, et al. Among authors: stocker t. Plant Cell Environ. 2024 Jan;47(1):91-105. doi: 10.1111/pce.14719. Epub 2023 Sep 18. Plant Cell Environ. 2024. PMID: 37718770

10

Use of Maize (Zea mays L.) Mutator Transposon-Induced Mutants of the BonnMu Resource for Forward and Reverse Genetics Studies.

Win YN, Pöschel M, Stöcker T, Du X, Klaus A, Braun BW, Lukas L, Brox A, Schoof H, Hochholdinger F, Marcon C. Win YN, et al. Among authors: stocker t. Cold Spring Harb Protoc. 2024 Sep 9. doi: 10.1101/pdb.prot108587. Online ahead of print. Cold Spring Harb Protoc. 2024. PMID: 39251334

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