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Population-specific reference panel improves imputation quality for genome-wide association studies conducted on the Japanese population.
Flanagan J, Liu X, Ortega-Reyes D, Tomizuka K, Matoba N, Akiyama M, Koido M, Ishigaki K, Ashikawa K, Takata S, Shi M, Aoi T, Momozawa Y, Ito K, Murakami Y, Matsuda K; Biobank Japan Project; Kamatani Y, Morris AP, Horikoshi M, Terao C. Flanagan J, et al. Among authors: koido m. Commun Biol. 2024 Dec 19;7(1):1665. doi: 10.1038/s42003-024-07338-4. Commun Biol. 2024. PMID: 39702642 Free PMC article.
Update of the FANTOM web resource: enhancement for studying noncoding genomes.
Nobusada T, Yip CW, Agrawal S, Severin J, Abugessaisa I, Hasegawa A, Hon CC, Ide S, Koido M, Kondo A, Masuya H, Oki S, Tagami M, Takada T, Terao C, Thalhath N, Walker S, Yasuzawa K, Shin JW, de Hoon MJL, Carninci P, Kawaji H, Kasukawa T. Nobusada T, et al. Among authors: koido m. Nucleic Acids Res. 2025 Jan 6;53(D1):D419-D424. doi: 10.1093/nar/gkae1047. Nucleic Acids Res. 2025. PMID: 39592010 Free PMC article.
Population-specific putative causal variants shape quantitative traits.
Koyama S, Liu X, Koike Y, Hikino K, Koido M, Li W, Akaki K, Tomizuka K, Ito S, Otomo N, Suetsugu H, Yoshino S, Akiyama M, Saito K, Ishikawa Y, Benner C, Natarajan P, Ellinor PT, Mushiroda T, Horikoshi M, Ikeda M, Iwata N, Matsuda K; Biobank Japan Project; Niida S, Ozaki K, Momozawa Y, Ikegawa S, Takeuchi O, Ito K, Terao C. Koyama S, et al. Among authors: koido m. Nat Genet. 2024 Oct;56(10):2027-2035. doi: 10.1038/s41588-024-01913-5. Epub 2024 Oct 3. Nat Genet. 2024. PMID: 39363016 Free PMC article.
Causal relevance of different blood pressure traits on risk of cardiovascular diseases: GWAS and Mendelian randomisation in 100,000 Chinese adults.
Pozarickij A, Gan W, Lin K, Clarke R, Fairhurst-Hunter Z, Koido M, Kanai M, Okada Y, Kamatani Y, Bennett D, Du H, Chen Y, Yang L, Avery D, Guo Y, Yu M, Yu C, Schmidt Valle D, Lv J, Chen J, Peto R, Collins R, Li L, Chen Z, Millwood IY, Walters RG; China Kadoorie Biobank Collaborative Group. Pozarickij A, et al. Among authors: koido m. Nat Commun. 2024 Jul 24;15(1):6265. doi: 10.1038/s41467-024-50297-x. Nat Commun. 2024. PMID: 39048560 Free PMC article.
Proteogenomics in cerebrospinal fluid and plasma reveals new biological fingerprint of cerebral small vessel disease.
Debette S, Caro I, Western D, Namba S, Sun N, Kawaguchi S, He Y, Fujita M, Roshchupkin G, D'Aoust T, Duperron MG, Sargurupremraj M, Tsuchida A, Koido M, Ahmadi M, Yang C, Timsina J, Ibanez L, Matsuda K, Suzuki Y, Oda Y, Kanai A, Jandaghi P, Munter HM, Auld D, Astafeva I, Puerta R, Rotter J, Psaty B, Bis J, Longstreth W, Couffinhal T, Garcia-Gonzalez P, Pytel V, Marquié M, Cano A, Boada M, Joliot M, Lathrop M, Le Grand Q, Launer L, Wardlaw J, Heiman M, Ruiz A, Matthews P, Seshadri S, Fornage M, Adams H, Mishra A, Trégouët DA, Okada Y, Kellis M, De Jager P, Tzourio C, Kamatani Y, Matsuda F, Cruchaga C. Debette S, et al. Among authors: koido m. Res Sq [Preprint]. 2024 Jul 2:rs.3.rs-4535534. doi: 10.21203/rs.3.rs-4535534/v1. Res Sq. 2024. PMID: 39011113 Free PMC article. Preprint.
Self-Organization of Sinusoidal Vessels in Pluripotent Stem Cell-derived Human Liver Bud Organoids.
Saiki N, Nio Y, Yoneyama Y, Kawamura S, Iwasawa K, Kawakami E, Araki K, Fukumura J, Sakairi T, Kono T, Ohmura R, Koido M, Funata M, Thompson WL, Cruz-Encarnacion P, Chen YW, Takebe T. Saiki N, et al. Among authors: koido m. bioRxiv [Preprint]. 2024 Jul 4:2024.07.02.601804. doi: 10.1101/2024.07.02.601804. bioRxiv. 2024. PMID: 39005378 Free PMC article. Preprint.
An atlas of transcribed enhancers across helper T cell diversity for decoding human diseases.
Oguchi A, Suzuki A, Komatsu S, Yoshitomi H, Bhagat S, Son R, Bonnal RJP, Kojima S, Koido M, Takeuchi K, Myouzen K, Inoue G, Hirai T, Sano H, Takegami Y, Kanemaru A, Yamaguchi I, Ishikawa Y, Tanaka N, Hirabayashi S, Konishi R, Sekito S, Inoue T, Kere J, Takeda S, Takaori-Kondo A, Endo I, Kawaoka S, Kawaji H, Ishigaki K, Ueno H, Hayashizaki Y, Pagani M, Carninci P, Yanagita M; ITEC Consortium‡; Parrish N, Terao C, Yamamoto K, Murakawa Y; ITEC Consortium Members. Oguchi A, et al. Among authors: koido m. Science. 2024 Jul 5;385(6704):eadd8394. doi: 10.1126/science.add8394. Epub 2024 Jul 5. Science. 2024. PMID: 38963856
RNF213 Variants, Vasospastic Angina, and Risk of Fatal Myocardial Infarction.
Hikino K, Koyama S, Ito K, Koike Y, Koido M, Matsumura T, Kurosawa R, Tomizuka K, Ito S, Liu X, Ishikawa Y, Momozawa Y, Morisaki T, Kamatani Y, Mushiroda T, Terao C; Biobank Japan Project. Hikino K, et al. Among authors: koido m. JAMA Cardiol. 2024 Aug 1;9(8):723-731. doi: 10.1001/jamacardio.2024.1483. JAMA Cardiol. 2024. PMID: 38888930 Free PMC article.
58 results