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Analysis of mutations in precision oncology using the automated, accurate, and user-friendly web tool PredictONCO.
Khan RT, Pokorna P, Stourac J, Borko S, Dobias A, Planas-Iglesias J, Mazurenko S, Arefiev I, Pinto G, Szotkowska V, Sterba J, Damborsky J, Slaby O, Bednar D. Khan RT, et al. Among authors: stourac j. Comput Struct Biotechnol J. 2024 Nov 14;24:734-738. doi: 10.1016/j.csbj.2024.11.026. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39687752 Free PMC article.
Visual Support for the Loop Grafting Workflow on Proteins.
Opaleny F, Ulbrich P, Planas-Iglesias J, Byska J, Stourac J, Bednar D, Furmanova K, Kozlikova B. Opaleny F, et al. Among authors: stourac j. IEEE Trans Vis Comput Graph. 2024 Sep 10;PP. doi: 10.1109/TVCG.2024.3456401. Online ahead of print. IEEE Trans Vis Comput Graph. 2024. PMID: 39255099
A computational workflow for analysis of missense mutations in precision oncology.
Khan RT, Pokorna P, Stourac J, Borko S, Arefiev I, Planas-Iglesias J, Dobias A, Pinto G, Szotkowska V, Sterba J, Slaby O, Damborsky J, Mazurenko S, Bednar D. Khan RT, et al. Among authors: stourac j. J Cheminform. 2024 Jul 29;16(1):86. doi: 10.1186/s13321-024-00876-3. J Cheminform. 2024. PMID: 39075588 Free PMC article.
Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web.
Musil M, Jezik A, Jankujova M, Stourac J, Galgonek J, Mustafa Eyrilmez S, Vondrasek J, Damborsky J, Bednar D. Musil M, et al. Among authors: stourac j. Comput Struct Biotechnol J. 2022 Nov 17;20:6512-6518. doi: 10.1016/j.csbj.2022.11.031. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36467577 Free PMC article.
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering.
Planas-Iglesias J, Opaleny F, Ulbrich P, Stourac J, Sanusi Z, Pinto GP, Schenkmayerova A, Byska J, Damborsky J, Kozlikova B, Bednar D. Planas-Iglesias J, et al. Among authors: stourac j. Nucleic Acids Res. 2022 Jul 5;50(W1):W465-W473. doi: 10.1093/nar/gkac249. Nucleic Acids Res. 2022. PMID: 35438789 Free PMC article.
29 results