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Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments.
Barcenilla C, Cobo-Díaz JF, De Filippis F, Valentino V, Cabrera Rubio R, O'Neil D, Mahler de Sanchez L, Armanini F, Carlino N, Blanco-Míguez A, Pinto F, Calvete-Torre I, Sabater C, Delgado S, Ruas-Madiedo P, Quijada NM, Dzieciol M, Skírnisdóttir S, Knobloch S, Puente A, López M, Prieto M, Marteinsson VT, Wagner M, Margolles A, Segata N, Cotter PD, Ercolini D, Alvarez-Ordóñez A. Barcenilla C, et al. Among authors: de filippis f. Nat Protoc. 2024 May;19(5):1291-1310. doi: 10.1038/s41596-023-00949-x. Epub 2024 Jan 24. Nat Protoc. 2024. PMID: 38267717
Microbiome mapping in dairy industry reveals new species and genes for probiotic and bioprotective activities.
De Filippis F, Valentino V, Yap M, Cabrera-Rubio R, Barcenilla C, Carlino N, Cobo-Díaz JF, Quijada NM, Calvete-Torre I, Ruas-Madiedo P, Sabater C, Sequino G, Pasolli E, Wagner M, Margolles A, Segata N, Álvarez-Ordóñez A, Cotter PD, Ercolini D. De Filippis F, et al. NPJ Biofilms Microbiomes. 2024 Aug 2;10(1):67. doi: 10.1038/s41522-024-00541-5. NPJ Biofilms Microbiomes. 2024. PMID: 39095404 Free PMC article.
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.
Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Carlino N, et al. Among authors: de filippis f. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Epub 2024 Aug 29. Cell. 2024. PMID: 39214080 Free article.
Metagenomics insights into food fermentations.
De Filippis F, Parente E, Ercolini D. De Filippis F, et al. Microb Biotechnol. 2017 Jan;10(1):91-102. doi: 10.1111/1751-7915.12421. Epub 2016 Oct 6. Microb Biotechnol. 2017. PMID: 27709807 Free PMC article. Review.
112 results