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Correction for Zhu et al., "Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy".
Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, Armstrong G, Vázquez-Baeza Y, Yu J, Kuczynski J, Sepich-Poore GD, Swafford AD, Das P, Shaffer JP, Lejzerowicz F, Belda-Ferre P, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Kim H-C, Jain M, Inouye M, Gilbert JA, Knight R. Zhu Q, et al. Among authors: vazquez baeza y. mSystems. 2024 Nov 19;9(11):e0128924. doi: 10.1128/msystems.01289-24. Epub 2024 Oct 18. mSystems. 2024. PMID: 39422474 Free PMC article. No abstract available.
Integration of polygenic and gut metagenomic risk prediction for common diseases.
Liu Y, Ritchie SC, Teo SM, Ruuskanen MO, Kambur O, Zhu Q, Sanders J, Vázquez-Baeza Y, Verspoor K, Jousilahti P, Lahti L, Niiranen T, Salomaa V, Havulinna AS, Knight R, Méric G, Inouye M. Liu Y, et al. Among authors: vazquez baeza y. Nat Aging. 2024 Apr;4(4):584-594. doi: 10.1038/s43587-024-00590-7. Epub 2024 Mar 25. Nat Aging. 2024. PMID: 38528230 Free PMC article.
Author Correction: Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.
Qin Y, Havulinna AS, Liu Y, Jousilahti P, Ritchie SC, Tokolyi A, Sanders JG, Valsta L, Brożyńska M, Zhu Q, Tripathi A, Vázquez-Baeza Y, Loomba R, Cheng S, Jain M, Niiranen T, Lahti L, Knight R, Salomaa V, Inouye M, Méric G. Qin Y, et al. Among authors: vazquez baeza y. Nat Genet. 2024 Mar;56(3):554. doi: 10.1038/s41588-024-01693-y. Nat Genet. 2024. PMID: 38424462 No abstract available.
Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies.
Usyk M, Peters BA, Karthikeyan S, McDonald D, Sollecito CC, Vazquez-Baeza Y, Shaffer JP, Gellman MD, Talavera GA, Daviglus ML, Thyagarajan B, Knight R, Qi Q, Kaplan R, Burk RD. Usyk M, et al. Among authors: vazquez baeza y. Cell Rep Methods. 2023 Jan 23;3(1):100391. doi: 10.1016/j.crmeth.2022.100391. eCollection 2023 Jan 23. Cell Rep Methods. 2023. PMID: 36814836 Free PMC article.
The gut microbiome is a significant risk factor for future chronic lung disease.
Liu Y, Teo SM, Méric G, Tang HHF, Zhu Q, Sanders JG, Vázquez-Baeza Y, Verspoor K, Vartiainen VA, Jousilahti P, Lahti L, Niiranen T, Havulinna AS, Knight R, Salomaa V, Inouye M. Liu Y, et al. Among authors: vazquez baeza y. J Allergy Clin Immunol. 2023 Apr;151(4):943-952. doi: 10.1016/j.jaci.2022.12.810. Epub 2022 Dec 29. J Allergy Clin Immunol. 2023. PMID: 36587850 Free PMC article.
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.
Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, Armstrong G, Vázquez-Baeza Y, Yu J, Kuczynski J, Sepich-Poore GD, Swafford AD, Das P, Shaffer JP, Lejzerowicz F, Belda-Ferre P, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Kim HC, Jain M, Inouye M, Gilbert JA, Knight R. Zhu Q, et al. Among authors: vazquez baeza y. mSystems. 2022 Apr 26;7(2):e0016722. doi: 10.1128/msystems.00167-22. Epub 2022 Apr 4. mSystems. 2022. PMID: 35369727 Free PMC article.
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting.
Liu Y, Méric G, Havulinna AS, Teo SM, Åberg F, Ruuskanen M, Sanders J, Zhu Q, Tripathi A, Verspoor K, Cheng S, Jain M, Jousilahti P, Vázquez-Baeza Y, Loomba R, Lahti L, Niiranen T, Salomaa V, Knight R, Inouye M. Liu Y, et al. Among authors: vazquez baeza y. Cell Metab. 2022 May 3;34(5):719-730.e4. doi: 10.1016/j.cmet.2022.03.002. Epub 2022 Mar 29. Cell Metab. 2022. PMID: 35354069 Free PMC article.
75 results